Analysis of interatomic Contacts of Structural Units in PDB entry:
9SE6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SE6 entry

There are 19 chains in PDB entry 9SE6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
3	GLN 44	GLY 264
4	LYS 53	LEU 264
5	ASP 31	GLN 257
6	SER 28	PRO 257
7	VAL 29	ALA 241
8	ARG 27	LEU 243
A	ALA 10	GLY 751
B	THR 3	GLY 735
C	ALA 2	TYR 81
D	TRP 53	ILE 196
E	GLU 34	LYS 97
I	PRO 68	PRO 104
J	MET 1	SER 40
K	GLY 28	LEU 113
Z	LYS 35	PHE 228
1	LYS 35	PHE 228
F	ASP 63	ARG 227
G	LEU 32	SER 126
L	GLY 53	GLN 190

There are187 helices in PDB entry 9SE6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	3	52	56	Right-handed 310
Helix 2	AA2	3	83	105	Right-handed alpha
Helix 3	AA3	3	106	114	Right-handed alpha
Helix 4	AA4	3	118	122	Right-handed 310
Helix 5	AA5	3	124	128	Right-handed 310
Helix 6	AA6	3	131	135	Right-handed 310
Helix 7	AA7	3	143	168	Right-handed alpha
Helix 8	AA8	3	170	174	Right-handed 310
Helix 9	AA9	3	179	184	Right-handed 310
Helix 10	AB1	3	194	199	Right-handed alpha
Helix 11	AB2	3	206	239	Right-handed alpha
Helix 12	AB3	3	241	252	Right-handed alpha
Helix 13	AB4	3	257	262	Right-handed alpha
Helix 14	AB5	4	89	124	Right-handed alpha
Helix 15	AB6	4	136	140	Right-handed 310
Helix 16	AB7	4	145	170	Right-handed alpha
Helix 17	AB8	4	195	199	Right-handed 310
Helix 18	AB9	4	202	206	Right-handed 310
Helix 19	AC1	4	207	237	Right-handed alpha
Helix 20	AC2	4	239	250	Right-handed alpha
Helix 21	AC3	4	251	254	Right-handed 310
Helix 22	AC4	4	255	264	Right-handed alpha
Helix 23	AC5	5	63	95	Right-handed alpha
Helix 24	AC6	5	99	103	Right-handed 310
Helix 25	AC7	5	105	109	Right-handed 310
Helix 26	AC8	5	110	114	Right-handed 310
Helix 27	AC9	5	117	142	Right-handed alpha
Helix 28	AD1	5	166	170	Right-handed 310
Helix 29	AD2	5	178	208	Right-handed alpha
Helix 30	AD3	5	210	221	Right-handed alpha
Helix 31	AD4	5	226	231	Right-handed alpha
Helix 32	AD5	6	60	92	Right-handed alpha
Helix 33	AD6	6	96	98	Right-handed 310
Helix 34	AD7	6	99	104	Right-handed alpha
Helix 35	AD8	6	108	134	Right-handed alpha
Helix 36	AD9	6	158	162	Right-handed 310
Helix 37	AE1	6	168	198	Right-handed alpha
Helix 38	AE2	6	200	211	Right-handed alpha
Helix 39	AE3	6	212	215	Right-handed 310
Helix 40	AE4	6	216	220	Right-handed 310
Helix 41	AE5	6	252	256	Right-handed 310
Helix 42	AE6	7	61	95	Right-handed alpha
Helix 43	AE7	7	101	103	Right-handed 310
Helix 44	AE8	7	104	113	Right-handed alpha
Helix 45	AE9	7	116	141	Right-handed alpha
Helix 46	AF1	7	143	147	Right-handed 310
Helix 47	AF2	7	154	158	Right-handed 310
Helix 48	AF3	7	166	171	Right-handed alpha
Helix 49	AF4	7	179	212	Right-handed alpha
Helix 50	AF5	7	214	225	Right-handed alpha
Helix 51	AF6	7	230	234	Right-handed 310
Helix 52	AF7	8	37	41	Right-handed 310
Helix 53	AF8	8	42	47	Right-handed alpha
Helix 54	AF9	8	62	96	Right-handed alpha
Helix 55	AG1	8	106	114	Right-handed alpha
Helix 56	AG2	8	118	143	Right-handed alpha
Helix 57	AG3	8	145	149	Right-handed 310
Helix 58	AG4	8	155	160	Right-handed 310
Helix 59	AG5	8	170	174	Right-handed 310
Helix 60	AG6	8	177	183	Right-handed 310
Helix 61	AG7	8	184	214	Right-handed alpha
Helix 62	AG8	8	216	227	Right-handed alpha
Helix 63	AG9	8	232	236	Right-handed 310
Helix 64	AH1	A	27	31	Right-handed 310
Helix 65	AH2	A	46	55	Right-handed alpha
Helix 66	AH3	A	58	63	Right-handed alpha
Helix 67	AH4	A	65	98	Right-handed alpha
Helix 68	AH5	A	100	107	Right-handed alpha
Helix 69	AH6	A	123	128	Right-handed 310
Helix 70	AH7	A	143	151	Right-handed alpha
Helix 71	AH8	A	155	183	Right-handed alpha
Helix 72	AH9	A	187	192	Right-handed alpha
Helix 73	AI1	A	193	204	Right-handed alpha
Helix 74	AI2	A	205	220	Right-handed alpha
Helix 75	AI3	A	220	230	Right-handed alpha
Helix 76	AI4	A	233	237	Right-handed 310
Helix 77	AI5	A	239	246	Right-handed alpha
Helix 78	AI6	A	246	254	Right-handed alpha
Helix 79	AI7	A	255	260	Right-handed 310
Helix 80	AI8	A	261	266	Right-handed alpha
Helix 81	AI9	A	268	275	Right-handed 310
Helix 82	AJ1	A	290	309	Right-handed alpha
Helix 83	AJ2	A	321	329	Right-handed alpha
Helix 84	AJ3	A	340	348	Right-handed alpha
Helix 85	AJ4	A	348	374	Right-handed alpha
Helix 86	AJ5	A	383	416	Right-handed alpha
Helix 87	AJ6	A	418	422	Right-handed 310
Helix 88	AJ7	A	425	432	Right-handed alpha
Helix 89	AJ8	A	433	465	Right-handed alpha
Helix 90	AJ9	A	467	471	Right-handed 310
Helix 91	AK1	A	481	493	Right-handed alpha
Helix 92	AK2	A	507	511	Right-handed 310
Helix 93	AK3	A	529	556	Right-handed alpha
Helix 94	AK4	A	565	570	Right-handed alpha
Helix 95	AK5	A	587	618	Right-handed alpha
Helix 96	AK6	A	634	639	Right-handed alpha
Helix 97	AK7	A	641	649	Right-handed alpha
Helix 98	AK8	A	649	654	Right-handed alpha
Helix 99	AK9	A	654	659	Right-handed alpha
Helix 100	AL1	A	665	688	Right-handed alpha
Helix 101	AL2	A	689	707	Right-handed alpha
Helix 102	AL3	A	719	751	Right-handed alpha
Helix 103	AL4	B	10	15	Right-handed alpha
Helix 104	AL5	B	21	28	Right-handed alpha
Helix 105	AL6	B	31	35	Right-handed 310
Helix 106	AL7	B	39	73	Right-handed alpha
Helix 107	AL8	B	74	79	Right-handed alpha
Helix 108	AL9	B	98	106	Right-handed alpha
Helix 109	AM1	B	120	128	Right-handed alpha
Helix 110	AM2	B	132	157	Right-handed alpha
Helix 111	AM3	B	158	163	Right-handed 310
Helix 112	AM4	B	165	170	Right-handed alpha
Helix 113	AM5	B	171	182	Right-handed alpha
Helix 114	AM6	B	184	198	Right-handed alpha
Helix 115	AM7	B	198	204	Right-handed alpha
Helix 116	AM8	B	223	229	Right-handed alpha
Helix 117	AM9	B	230	236	Right-handed 310
Helix 118	AN1	B	270	289	Right-handed alpha
Helix 119	AN2	B	301	309	Right-handed alpha
Helix 120	AN3	B	322	330	Right-handed alpha
Helix 121	AN4	B	330	356	Right-handed alpha
Helix 122	AN5	B	365	398	Right-handed alpha
Helix 123	AN6	B	401	405	Right-handed 310
Helix 124	AN7	B	407	415	Right-handed alpha
Helix 125	AN8	B	415	447	Right-handed alpha
Helix 126	AN9	B	449	453	Right-handed 310
Helix 127	AO1	B	458	468	Right-handed alpha
Helix 128	AO2	B	477	481	Right-handed 310
Helix 129	AO3	B	484	491	Right-handed alpha
Helix 130	AO4	B	494	503	Right-handed alpha
Helix 131	AO5	B	514	541	Right-handed alpha
Helix 132	AO6	B	550	555	Right-handed 310
Helix 133	AO7	B	572	604	Right-handed alpha
Helix 134	AO8	B	606	614	Right-handed alpha
Helix 135	AO9	B	616	624	Right-handed alpha
Helix 136	AP1	B	626	630	Right-handed 310
Helix 137	AP2	B	631	634	Right-handed 310
Helix 138	AP3	B	644	667	Right-handed alpha
Helix 139	AP4	B	668	686	Right-handed alpha
Helix 140	AP5	B	702	734	Right-handed alpha
Helix 141	AP6	C	15	21	Right-handed alpha
Helix 142	AP7	C	44	48	Right-handed 310
Helix 143	AP8	C	52	58	Right-handed alpha
Helix 144	AP9	D	76	81	Right-handed alpha
Helix 145	AQ1	D	117	133	Right-handed alpha
Helix 146	AQ2	D	174	178	Right-handed 310
Helix 147	AQ3	D	180	185	Right-handed 310
Helix 148	AQ4	D	192	196	Right-handed 310
Helix 149	AQ5	E	89	91	Right-handed 310
Helix 150	AQ6	I	74	85	Right-handed alpha
Helix 151	AQ7	I	85	100	Right-handed alpha
Helix 152	AQ8	J	1	8	Right-handed alpha
Helix 153	AQ9	J	10	33	Right-handed alpha
Helix 154	AR1	K	32	51	Right-handed alpha
Helix 155	AR2	K	85	110	Right-handed alpha
Helix 156	AR3	Z	67	98	Right-handed alpha
Helix 157	AR4	Z	105	112	Right-handed 310
Helix 158	AR5	Z	126	149	Right-handed alpha
Helix 159	AR6	Z	155	159	Right-handed 310
Helix 160	AR7	Z	162	165	Right-handed 310
Helix 161	AR8	Z	166	198	Right-handed alpha
Helix 162	AR9	Z	201	212	Right-handed alpha
Helix 163	AS1	Z	213	216	Right-handed 310
Helix 164	AS2	Z	217	221	Right-handed 310
Helix 165	AS3	1	67	98	Right-handed alpha
Helix 166	AS4	1	105	112	Right-handed 310
Helix 167	AS5	1	126	149	Right-handed alpha
Helix 168	AS6	1	155	159	Right-handed 310
Helix 169	AS7	1	169	199	Right-handed alpha
Helix 170	AS8	1	201	212	Right-handed alpha
Helix 171	AS9	1	217	221	Right-handed 310
Helix 172	AT1	F	63	67	Right-handed 310
Helix 173	AT2	F	73	92	Right-handed alpha
Helix 174	AT3	F	98	121	Right-handed alpha
Helix 175	AT4	F	136	143	Right-handed alpha
Helix 176	AT5	F	149	175	Right-handed alpha
Helix 177	AT6	F	179	186	Right-handed alpha
Helix 178	AT7	F	188	199	Right-handed alpha
Helix 179	AT8	F	201	212	Right-handed alpha
Helix 180	AT9	F	218	222	Right-handed 310
Helix 181	AU1	G	33	52	Right-handed alpha
Helix 182	AU2	G	53	62	Right-handed alpha
Helix 183	AU3	G	96	120	Right-handed alpha
Helix 184	AU4	L	62	71	Right-handed alpha
Helix 185	AU5	L	80	104	Right-handed alpha
Helix 186	AU6	L	111	140	Right-handed alpha
Helix 187	AU7	L	163	188	Right-handed alpha

There are 18 sheets in PDB entry 9SE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	239	242	first strand
Strand 2	5	245	248	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	222	224	first strand
Strand 2	6	227	229	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	238	241	first strand
Strand 2	6	244	247	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	627	629	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	114	116	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	637	first strand
Strand 2	B	640	641	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	170	171	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	115	first strand
Strand 2	D	83	90	anti-parallel
Strand 3	D	137	141	anti-parallel
Strand 4	D	147	151	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	103	106	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	71	74	anti-parallel
Strand 3	E	56	62	anti-parallel
Strand 4	E	42	45	anti-parallel
Strand 5	E	93	95	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	59	61	first strand
Strand 2	K	67	69	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	117	118	first strand
Strand 2	Z	121	122	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	116	118	first strand
Strand 2	1	121	123	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	69	first strand
Strand 2	F	124	125	anti-parallel
Strand 3	F	131	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SE6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SE6