Analysis of interatomic Contacts of Structural Units in PDB entry:
9SE7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SE7 entry

There are 10 chains in PDB entry 9SE7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 10	GLY 751
B	THR 3	GLY 735
C	ALA 2	TYR 81
D	TRP 53	ILE 196
E	GLU 34	LYS 97
I	PRO 68	PRO 104
J	MET 1	SER 40
T	ALA 1	LYS 89
F	ASP 63	ARG 227
L	GLY 53	GLN 190

There are108 helices in PDB entry 9SE7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	55	Right-handed alpha
Helix 2	AA2	A	58	63	Right-handed alpha
Helix 3	AA3	A	65	98	Right-handed alpha
Helix 4	AA4	A	100	107	Right-handed alpha
Helix 5	AA5	A	123	128	Right-handed 310
Helix 6	AA6	A	143	151	Right-handed alpha
Helix 7	AA7	A	155	183	Right-handed alpha
Helix 8	AA8	A	187	192	Right-handed alpha
Helix 9	AA9	A	193	204	Right-handed alpha
Helix 10	AB1	A	206	220	Right-handed alpha
Helix 11	AB2	A	220	229	Right-handed alpha
Helix 12	AB3	A	233	237	Right-handed 310
Helix 13	AB4	A	239	246	Right-handed alpha
Helix 14	AB5	A	246	254	Right-handed alpha
Helix 15	AB6	A	255	260	Right-handed 310
Helix 16	AB7	A	261	266	Right-handed alpha
Helix 17	AB8	A	268	275	Right-handed 310
Helix 18	AB9	A	290	309	Right-handed alpha
Helix 19	AC1	A	321	329	Right-handed alpha
Helix 20	AC2	A	340	348	Right-handed alpha
Helix 21	AC3	A	348	374	Right-handed alpha
Helix 22	AC4	A	383	416	Right-handed alpha
Helix 23	AC5	A	425	433	Right-handed alpha
Helix 24	AC6	A	433	465	Right-handed alpha
Helix 25	AC7	A	467	471	Right-handed 310
Helix 26	AC8	A	481	494	Right-handed alpha
Helix 27	AC9	A	529	556	Right-handed alpha
Helix 28	AD1	A	565	570	Right-handed alpha
Helix 29	AD2	A	587	618	Right-handed alpha
Helix 30	AD3	A	634	639	Right-handed alpha
Helix 31	AD4	A	641	649	Right-handed alpha
Helix 32	AD5	A	649	654	Right-handed alpha
Helix 33	AD6	A	654	659	Right-handed alpha
Helix 34	AD7	A	665	688	Right-handed alpha
Helix 35	AD8	A	689	707	Right-handed alpha
Helix 36	AD9	A	719	751	Right-handed alpha
Helix 37	AE1	B	10	15	Right-handed alpha
Helix 38	AE2	B	21	28	Right-handed alpha
Helix 39	AE3	B	31	35	Right-handed 310
Helix 40	AE4	B	39	73	Right-handed alpha
Helix 41	AE5	B	74	81	Right-handed alpha
Helix 42	AE6	B	98	106	Right-handed alpha
Helix 43	AE7	B	120	128	Right-handed alpha
Helix 44	AE8	B	132	157	Right-handed alpha
Helix 45	AE9	B	158	163	Right-handed 310
Helix 46	AF1	B	165	170	Right-handed alpha
Helix 47	AF2	B	171	182	Right-handed alpha
Helix 48	AF3	B	184	198	Right-handed alpha
Helix 49	AF4	B	198	204	Right-handed alpha
Helix 50	AF5	B	212	216	Right-handed 310
Helix 51	AF6	B	223	229	Right-handed alpha
Helix 52	AF7	B	230	236	Right-handed 310
Helix 53	AF8	B	270	289	Right-handed alpha
Helix 54	AF9	B	301	309	Right-handed alpha
Helix 55	AG1	B	322	329	Right-handed alpha
Helix 56	AG2	B	330	356	Right-handed alpha
Helix 57	AG3	B	365	398	Right-handed alpha
Helix 58	AG4	B	407	415	Right-handed alpha
Helix 59	AG5	B	415	447	Right-handed alpha
Helix 60	AG6	B	449	453	Right-handed 310
Helix 61	AG7	B	458	468	Right-handed alpha
Helix 62	AG8	B	477	481	Right-handed 310
Helix 63	AG9	B	484	491	Right-handed alpha
Helix 64	AH1	B	494	503	Right-handed alpha
Helix 65	AH2	B	514	541	Right-handed alpha
Helix 66	AH3	B	550	554	Right-handed 310
Helix 67	AH4	B	563	567	Right-handed 310
Helix 68	AH5	B	572	604	Right-handed alpha
Helix 69	AH6	B	606	614	Right-handed alpha
Helix 70	AH7	B	616	624	Right-handed alpha
Helix 71	AH8	B	626	628	Right-handed 310
Helix 72	AH9	B	629	634	Right-handed alpha
Helix 73	AI1	B	644	667	Right-handed alpha
Helix 74	AI2	B	668	685	Right-handed alpha
Helix 75	AI3	B	702	734	Right-handed alpha
Helix 76	AI4	C	15	21	Right-handed alpha
Helix 77	AI5	C	44	48	Right-handed 310
Helix 78	AI6	C	52	58	Right-handed alpha
Helix 79	AI7	D	76	81	Right-handed alpha
Helix 80	AI8	D	117	133	Right-handed alpha
Helix 81	AI9	D	174	178	Right-handed 310
Helix 82	AJ1	D	180	185	Right-handed 310
Helix 83	AJ2	D	192	196	Right-handed 310
Helix 84	AJ3	E	89	91	Right-handed 310
Helix 85	AJ4	I	74	85	Right-handed alpha
Helix 86	AJ5	I	86	100	Right-handed alpha
Helix 87	AJ6	J	1	9	Right-handed alpha
Helix 88	AJ7	J	10	33	Right-handed alpha
Helix 89	AJ8	T	2	14	Right-handed alpha
Helix 90	AJ9	T	14	19	Right-handed alpha
Helix 91	AK1	T	20	22	Right-handed 310
Helix 92	AK2	T	32	40	Right-handed alpha
Helix 93	AK3	T	45	56	Right-handed alpha
Helix 94	AK4	T	68	86	Right-handed alpha
Helix 95	AK5	F	63	67	Right-handed 310
Helix 96	AK6	F	73	92	Right-handed alpha
Helix 97	AK7	F	98	121	Right-handed alpha
Helix 98	AK8	F	136	143	Right-handed alpha
Helix 99	AK9	F	149	175	Right-handed alpha
Helix 100	AL1	F	179	186	Right-handed alpha
Helix 101	AL2	F	188	199	Right-handed alpha
Helix 102	AL3	F	201	212	Right-handed alpha
Helix 103	AL4	F	218	222	Right-handed 310
Helix 104	AL5	L	62	72	Right-handed alpha
Helix 105	AL6	L	73	76	Right-handed 310
Helix 106	AL7	L	80	104	Right-handed alpha
Helix 107	AL8	L	111	140	Right-handed alpha
Helix 108	AL9	L	163	190	Right-handed alpha

There are 12 sheets in PDB entry 9SE7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	623	first strand
Strand 2	A	626	629	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	114	116	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	637	first strand
Strand 2	B	640	641	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	39	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	115	first strand
Strand 2	D	83	90	anti-parallel
Strand 3	D	137	141	anti-parallel
Strand 4	D	147	151	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	103	106	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	71	74	anti-parallel
Strand 3	E	56	62	anti-parallel
Strand 4	E	42	45	anti-parallel
Strand 5	E	93	95	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	69	first strand
Strand 2	F	124	125	anti-parallel
Strand 3	F	131	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SE7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SE7