Analysis of interatomic Contacts of Structural Units in PDB entry:
9SF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SF6 entry

There are 2 chains in PDB entry 9SF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 23VAL 490
A
 ALA 23VAL 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 9SF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
38 40Right-handed 310
Helix 2
AA2
B
55 59Right-handed 310
Helix 3
AA3
B
178 180Right-handed 310
Helix 4
AA4
B
199 203Right-handed 310
Helix 5
AA5
B
402 404Right-handed 310
Helix 6
AA6
B
435 444Right-handed alpha
Helix 7
AA7
A
38 40Right-handed 310
Helix 8
AA8
A
55 59Right-handed 310
Helix 9
AA9
A
178 180Right-handed 310
Helix 10
AB1
A
199 203Right-handed 310
Helix 11
AB2
A
402 404Right-handed 310
Helix 12
AB3
A
435 444Right-handed alpha
Back to top of page

There are 16 sheets in PDB entry 9SF6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
42 44anti-parallel
Strand 3
B
25 29anti-parallel
Strand 4
B
62 67parallel
Strand 5
B
85 93parallel
Strand 6
B
116 125parallel
Strand 7
B
141 144parallel
Strand 8
B
173 176parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
42 44anti-parallel
Strand 3
B
25 29anti-parallel
Strand 4
B
62 67parallel
Strand 5
B
85 93parallel
Strand 6
B
116 125parallel
Strand 7
B
148 152parallel
Strand 8
B
182 187parallel
Strand 9
B
207 211parallel
Strand 10
B
231 233parallel
Strand 11
B
249 251parallel
Strand 12
B
271 272parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 77first strand
Strand 2
B
105 107parallel
Strand 3
B
137 139parallel
Strand 4
B
157 160parallel
Strand 5
B
191 194parallel
Strand 6
B
219 221parallel
Strand 7
B
236 240parallel
Strand 8
B
256 260parallel
Strand 9
B
277 281parallel
Strand 10
B
294 299parallel
Strand 11
B
311 315parallel
Strand 12
B
333 336parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 265first strand
Strand 2
B
284 286parallel
Strand 3
B
301 305parallel
Strand 4
B
320 324parallel
Strand 5
B
341 345parallel
Strand 6
B
359 363parallel
Strand 7
B
378 380parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 328first strand
Strand 2
B
348 354parallel
Strand 3
B
365 373parallel
Strand 4
B
385 389parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 328first strand
Strand 2
B
348 354parallel
Strand 3
B
365 373parallel
Strand 4
B
392 393parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 401first strand
Strand 2
B
430 434parallel
Strand 3
B
463 464parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 413first strand
Strand 2
B
406 409anti-parallel
Strand 3
B
447 454anti-parallel
Strand 4
B
483 490anti-parallel
Strand 5
B
472 478anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
25 29anti-parallel
Strand 4
A
62 65parallel
Strand 5
A
85 92parallel
Strand 6
A
116 125parallel
Strand 7
A
141 144parallel
Strand 8
A
173 176parallel
Back to list of sheets
Back to top of page

There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
25 29anti-parallel
Strand 4
A
62 65parallel
Strand 5
A
85 92parallel
Strand 6
A
116 125parallel
Strand 7
A
148 152parallel
Strand 8
A
182 187parallel
Strand 9
A
207 211parallel
Strand 10
A
231 233parallel
Strand 11
A
249 251parallel
Strand 12
A
271 272parallel
Back to list of sheets
Back to top of page

There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
137 139parallel
Strand 3
A
157 160parallel
Strand 4
A
191 194parallel
Strand 5
A
219 221parallel
Strand 6
A
236 240parallel
Strand 7
A
256 260parallel
Strand 8
A
277 281parallel
Strand 9
A
294 299parallel
Strand 10
A
311 315parallel
Strand 11
A
333 336parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
284 286parallel
Strand 3
A
301 305parallel
Strand 4
A
320 324parallel
Strand 5
A
341 345parallel
Strand 6
A
359 363parallel
Strand 7
A
378 380parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 328first strand
Strand 2
A
348 354parallel
Strand 3
A
365 373parallel
Strand 4
A
385 389parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 328first strand
Strand 2
A
348 354parallel
Strand 3
A
365 373parallel
Strand 4
A
392 393parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 401first strand
Strand 2
A
430 434parallel
Strand 3
A
463 464parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
406 409anti-parallel
Strand 3
A
447 454anti-parallel
Strand 4
A
483 490anti-parallel
Strand 5
A
472 478anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il