Analysis of interatomic Contacts of Structural Units in PDB entry:
9SF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SF8 entry

There is 1 chain in PDB entry 9SF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1LEU 562
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 9SF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 9Right-handed alpha
Helix 2
AA2
A
139 146Right-handed alpha
Helix 3
AA3
A
279 293Right-handed alpha
Helix 4
AA4
A
319 333Right-handed alpha
Helix 5
AA5
A
401 405Right-handed 310
Helix 6
AA6
A
447 469Right-handed alpha
Helix 7
AA7
A
486 494Right-handed alpha
Helix 8
AA8
A
505 509Right-handed 310
Helix 9
AA9
A
529 531Right-handed 310
Helix 10
AB1
A
546 550Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 9SF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 31first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
53 58anti-parallel
Strand 4
A
93 106parallel
Strand 5
A
67 78anti-parallel
Strand 6
A
20 31anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
151 155parallel
Strand 3
A
217 225anti-parallel
Strand 4
A
228 233anti-parallel
Strand 5
A
197 201parallel
Strand 6
A
167 171anti-parallel
Strand 7
A
158 159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
241 243anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
359 364anti-parallel
Strand 3
A
299 305anti-parallel
Strand 4
A
261 271parallel
Strand 5
A
558 562anti-parallel
Strand 6
A
535 538anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
411 417anti-parallel
Strand 3
A
394 396anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
411 417anti-parallel
Strand 3
A
420 428anti-parallel
Strand 4
A
473 479parallel
Strand 5
A
522 527anti-parallel
Strand 6
A
497 499anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
389 390anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 514first strand
Strand 2
A
517 519anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il