Analysis of interatomic Contacts of Structural Units in PDB entry:
9SFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SFD entry

There is 1 chain in PDB entry 9SFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 62ASP 882
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9SFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 89Right-handed alpha
Helix 2
AA2
A
101 103Right-handed 310
Helix 3
AA3
A
104 123Right-handed alpha
Helix 4
AA4
A
124 127Right-handed 310
Helix 5
AA5
A
128 139Right-handed alpha
Helix 6
AA6
A
151 206Right-handed alpha
Helix 7
AA7
A
208 229Right-handed alpha
Helix 8
AA8
A
236 251Right-handed alpha
Helix 9
AA9
A
253 263Right-handed alpha
Helix 10
AB1
A
273 309Right-handed alpha
Helix 11
AB2
A
314 328Right-handed alpha
Helix 12
AB3
A
332 345Right-handed alpha
Helix 13
AB4
A
350 363Right-handed alpha
Helix 14
AB5
A
364 372Right-handed alpha
Helix 15
AB6
A
374 389Right-handed alpha
Helix 16
AB7
A
392 408Right-handed alpha
Helix 17
AB8
A
411 427Right-handed alpha
Helix 18
AB9
A
434 455Right-handed alpha
Helix 19
AC1
A
457 466Right-handed alpha
Helix 20
AC2
A
467 469Right-handed 310
Helix 21
AC3
A
470 482Right-handed alpha
Helix 22
AC4
A
486 502Right-handed alpha
Helix 23
AC5
A
505 518Right-handed alpha
Helix 24
AC6
A
519 524Right-handed alpha
Helix 25
AC7
A
525 533Right-handed alpha
Helix 26
AC8
A
550 569Right-handed alpha
Helix 27
AC9
A
573 577Right-handed 310
Helix 28
AD1
A
579 597Right-handed alpha
Helix 29
AD2
A
628 633Right-handed alpha
Helix 30
AD3
A
638 648Right-handed alpha
Helix 31
AD4
A
681 683Right-handed 310
Helix 32
AD5
A
692 716Right-handed alpha
Helix 33
AD6
A
738 753Right-handed alpha
Helix 34
AD7
A
786 813Right-handed alpha
Helix 35
AD8
A
816 830Right-handed alpha
Helix 36
AD9
A
839 848Right-handed alpha
Helix 37
AE1
A
849 858Right-handed alpha
Helix 38
AE2
A
859 866Right-handed alpha
Helix 39
AE3
A
869 878Right-handed alpha
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There are 4 sheets in PDB entry 9SFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 599first strand
Strand 2
A
621 622anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 663first strand
Strand 2
A
678 679anti-parallel
Strand 3
A
685 687anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
718 721first strand
Strand 2
A
726 729anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 761first strand
Strand 2
A
766 767anti-parallel
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