Analysis of interatomic Contacts of Structural Units in PDB entry:
9SGT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SGT entry

There are 2 chains in PDB entry 9SGT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 24ARG 740
B
 ASN 41ARG 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 74 helices in PDB entry 9SGT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
44 50Right-handed 310
Helix 3
AA3
A
52 56Right-handed 310
Helix 4
AA4
A
63 69Right-handed alpha
Helix 5
AA5
A
72 86Right-handed alpha
Helix 6
AA6
A
93 97Right-handed 310
Helix 7
AA7
A
98 111Right-handed alpha
Helix 8
AA8
A
125 129Right-handed 310
Helix 9
AA9
A
141 147Right-handed 310
Helix 10
AB1
A
148 156Right-handed alpha
Helix 11
AB2
A
157 159Right-handed 310
Helix 12
AB3
A
160 176Right-handed alpha
Helix 13
AB4
A
240 254Right-handed alpha
Helix 14
AB5
A
258 273Right-handed alpha
Helix 15
AB6
A
330 337Right-handed alpha
Helix 16
AB7
A
382 387Right-handed alpha
Helix 17
AB8
A
387 400Right-handed alpha
Helix 18
AB9
A
400 417Right-handed alpha
Helix 19
AC1
A
422 426Right-handed 310
Helix 20
AC2
A
436 440Right-handed 310
Helix 21
AC3
A
451 465Right-handed alpha
Helix 22
AC4
A
468 481Right-handed alpha
Helix 23
AC5
A
495 498Right-handed 310
Helix 24
AC6
A
499 504Right-handed alpha
Helix 25
AC7
A
513 531Right-handed alpha
Helix 26
AC8
A
539 559Right-handed alpha
Helix 27
AC9
A
580 585Right-handed alpha
Helix 28
AD1
A
586 588Right-handed 310
Helix 29
AD2
A
605 617Right-handed alpha
Helix 30
AD3
A
620 635Right-handed alpha
Helix 31
AD4
A
637 641Right-handed 310
Helix 32
AD5
A
655 663Right-handed alpha
Helix 33
AD6
A
692 701Right-handed alpha
Helix 34
AD7
A
701 712Right-handed alpha
Helix 35
AD8
A
716 733Right-handed alpha
Helix 36
AD9
B
44 50Right-handed 310
Helix 37
AE1
B
63 69Right-handed alpha
Helix 38
AE2
B
72 86Right-handed alpha
Helix 39
AE3
B
93 97Right-handed 310
Helix 40
AE4
B
98 111Right-handed alpha
Helix 41
AE5
B
130 135Right-handed 310
Helix 42
AE6
B
140 148Right-handed alpha
Helix 43
AE7
B
148 156Right-handed alpha
Helix 44
AE8
B
157 159Right-handed 310
Helix 45
AE9
B
160 176Right-handed alpha
Helix 46
AF1
B
234 238Right-handed 310
Helix 47
AF2
B
240 254Right-handed alpha
Helix 48
AF3
B
258 271Right-handed alpha
Helix 49
AF4
B
280 284Right-handed 310
Helix 50
AF5
B
287 291Right-handed 310
Helix 51
AF6
B
292 296Right-handed 310
Helix 52
AF7
B
308 311Right-handed 310
Helix 53
AF8
B
330 337Right-handed alpha
Helix 54
AF9
B
378 387Right-handed alpha
Helix 55
AG1
B
387 400Right-handed alpha
Helix 56
AG2
B
400 417Right-handed alpha
Helix 57
AG3
B
422 426Right-handed 310
Helix 58
AG4
B
436 440Right-handed 310
Helix 59
AG5
B
451 464Right-handed alpha
Helix 60
AG6
B
468 481Right-handed alpha
Helix 61
AG7
B
495 498Right-handed 310
Helix 62
AG8
B
499 504Right-handed alpha
Helix 63
AG9
B
512 532Right-handed alpha
Helix 64
AH1
B
539 560Right-handed alpha
Helix 65
AH2
B
575 579Right-handed 310
Helix 66
AH3
B
580 585Right-handed alpha
Helix 67
AH4
B
586 588Right-handed 310
Helix 68
AH5
B
605 617Right-handed alpha
Helix 69
AH6
B
620 635Right-handed alpha
Helix 70
AH7
B
637 641Right-handed 310
Helix 71
AH8
B
655 662Right-handed alpha
Helix 72
AH9
B
693 701Right-handed alpha
Helix 73
AI1
B
701 712Right-handed alpha
Helix 74
AI2
B
716 733Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9SGT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 670first strand
Strand 2
A
678 681anti-parallel
Strand 3
A
687 691anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
313 320anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 345first strand
Strand 2
B
351 355anti-parallel
Strand 3
B
376 377anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 592first strand
Strand 2
B
597 598anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
667 670first strand
Strand 2
B
677 681anti-parallel
Strand 3
B
687 692anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il