Analysis of interatomic Contacts of Structural Units in PDB entry:
9SH4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SH4 entry

There is 1 chain in PDB entry 9SH4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLY 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9SH4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
17 32Right-handed alpha
Helix 3
AA3
A
43 76Right-handed alpha
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
107 137Right-handed alpha
Helix 6
AA6
A
141 147Right-handed alpha
Helix 7
AA7
A
219 226Right-handed alpha
Helix 8
AA8
A
263 268Right-handed 310
Helix 9
AA9
A
279 290Right-handed alpha
Helix 10
AB1
A
293 305Right-handed alpha
Helix 11
AB2
A
306 308Right-handed 310
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There are 3 sheets in PDB entry 9SH4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
34 38parallel
Strand 3
A
214 218anti-parallel
Strand 4
A
184 189anti-parallel
Strand 5
A
245 253anti-parallel
Strand 6
A
155 163anti-parallel
Strand 7
A
88 95anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
235 237anti-parallel
Strand 3
A
196 200anti-parallel
Strand 4
A
203 206anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
277 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il