Analysis of interatomic Contacts of Structural Units in PDB entry:
9SH6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SH6 entry

There are 10 chains in PDB entry 9SH6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 9	PHE 327
A	SER 9	PHE 327
K	TRP 1	TYR 13
I	TRP 1	TYR 13
G	LEU 30	GLN 98
C	LYS 38	GLY 421
E	ASP 15	ILE 472
F	LYS 38	GLY 421
D	ASP 15	ILE 472
H	LEU 30	GLN 98

There are 51 helices in PDB entry 9SH6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	18	22	Right-handed 310
Helix 2	AA2	B	37	73	Right-handed alpha
Helix 3	AA3	B	78	103	Right-handed alpha
Helix 4	AA4	B	108	114	Right-handed alpha
Helix 5	AA5	B	116	120	Right-handed 310
Helix 6	AA6	B	121	154	Right-handed alpha
Helix 7	AA7	B	161	195	Right-handed alpha
Helix 8	AA8	B	201	236	Right-handed alpha
Helix 9	AA9	B	242	268	Right-handed alpha
Helix 10	AB1	B	273	275	Right-handed 310
Helix 11	AB2	B	276	304	Right-handed alpha
Helix 12	AB3	A	18	22	Right-handed 310
Helix 13	AB4	A	37	73	Right-handed alpha
Helix 14	AB5	A	78	103	Right-handed alpha
Helix 15	AB6	A	108	114	Right-handed alpha
Helix 16	AB7	A	116	120	Right-handed 310
Helix 17	AB8	A	121	154	Right-handed alpha
Helix 18	AB9	A	161	195	Right-handed alpha
Helix 19	AC1	A	201	236	Right-handed alpha
Helix 20	AC2	A	242	268	Right-handed alpha
Helix 21	AC3	A	273	276	Right-handed 310
Helix 22	AC4	A	277	304	Right-handed alpha
Helix 23	AC5	G	31	46	Right-handed alpha
Helix 24	AC6	G	52	65	Right-handed alpha
Helix 25	AC7	G	72	77	Right-handed alpha
Helix 26	AC8	G	84	98	Right-handed alpha
Helix 27	AC9	C	39	58	Right-handed alpha
Helix 28	AD1	C	64	69	Right-handed alpha
Helix 29	AD2	E	16	40	Right-handed alpha
Helix 30	AD3	E	53	63	Right-handed alpha
Helix 31	AD4	E	326	335	Right-handed 310
Helix 32	AD5	E	360	374	Right-handed alpha
Helix 33	AD6	E	375	379	Right-handed 310
Helix 34	AD7	E	390	398	Right-handed alpha
Helix 35	AD8	E	416	431	Right-handed alpha
Helix 36	AD9	E	448	469	Right-handed alpha
Helix 37	AE1	F	39	58	Right-handed alpha
Helix 38	AE2	F	64	69	Right-handed alpha
Helix 39	AE3	F	335	342	Right-handed alpha
Helix 40	AE4	D	16	40	Right-handed alpha
Helix 41	AE5	D	53	66	Right-handed alpha
Helix 42	AE6	D	326	335	Right-handed 310
Helix 43	AE7	D	360	374	Right-handed alpha
Helix 44	AE8	D	375	379	Right-handed 310
Helix 45	AE9	D	390	397	Right-handed alpha
Helix 46	AF1	D	416	431	Right-handed alpha
Helix 47	AF2	D	448	469	Right-handed alpha
Helix 48	AF3	H	31	46	Right-handed alpha
Helix 49	AF4	H	52	67	Right-handed alpha
Helix 50	AF5	H	72	77	Right-handed alpha
Helix 51	AF6	H	84	98	Right-handed alpha

There are 20 sheets in PDB entry 9SH6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	B	35	36	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	F	382	388	anti-parallel
Strand 3	F	373	377	anti-parallel
Strand 4	F	363	368	anti-parallel
Strand 5	F	352	357	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	35	36	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	415	419	anti-parallel
Strand 3	C	406	410	anti-parallel
Strand 4	C	394	399	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	100	first strand
Strand 2	C	106	111	anti-parallel
Strand 3	C	117	120	anti-parallel
Strand 4	C	126	129	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	148	152	anti-parallel
Strand 3	C	158	162	anti-parallel
Strand 4	C	173	177	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	189	first strand
Strand 2	C	194	199	anti-parallel
Strand 3	C	204	208	anti-parallel
Strand 4	C	213	218	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	229	first strand
Strand 2	C	242	245	anti-parallel
Strand 3	C	253	256	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	303	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	357	first strand
Strand 2	C	363	368	anti-parallel
Strand 3	C	373	377	anti-parallel
Strand 4	C	382	387	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	44	first strand
Strand 2	E	313	317	parallel
Strand 3	E	306	310	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	344	first strand
Strand 2	E	383	387	parallel
Strand 3	E	437	441	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	88	first strand
Strand 2	F	415	419	anti-parallel
Strand 3	F	406	410	anti-parallel
Strand 4	F	394	399	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	100	first strand
Strand 2	F	106	111	anti-parallel
Strand 3	F	116	120	anti-parallel
Strand 4	F	126	129	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	142	first strand
Strand 2	F	148	152	anti-parallel
Strand 3	F	157	162	anti-parallel
Strand 4	F	173	178	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	191	first strand
Strand 2	F	194	197	anti-parallel
Strand 3	F	204	208	anti-parallel
Strand 4	F	213	218	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	228	229	first strand
Strand 2	F	242	245	anti-parallel
Strand 3	F	254	256	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	276	278	first strand
Strand 2	F	284	287	anti-parallel
Strand 3	F	294	298	anti-parallel
Strand 4	F	307	308	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	313	317	parallel
Strand 3	D	306	310	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	344	first strand
Strand 2	D	383	387	parallel
Strand 3	D	437	441	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SH6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SH6