Analysis of interatomic Contacts of Structural Units in PDB entry:
9SHP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SHP entry

There are 2 chains in PDB entry 9SHP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 111	LEU 862
C	U 1	A 6

There are 20 helices in PDB entry 9SHP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	143	150	Right-handed alpha
Helix 2	AA2	B	154	159	Right-handed alpha
Helix 3	AA3	B	208	223	Right-handed alpha
Helix 4	AA4	B	279	283	Right-handed 310
Helix 5	AA5	B	299	305	Right-handed alpha
Helix 6	AA6	B	384	388	Right-handed 310
Helix 7	AA7	B	400	412	Right-handed alpha
Helix 8	AA8	B	414	431	Right-handed alpha
Helix 9	AA9	B	432	441	Right-handed alpha
Helix 10	AB1	B	505	518	Right-handed alpha
Helix 11	AB2	B	519	524	Right-handed alpha
Helix 12	AB3	B	538	548	Right-handed alpha
Helix 13	AB4	B	566	579	Right-handed alpha
Helix 14	AB5	B	597	614	Right-handed alpha
Helix 15	AB6	B	672	691	Right-handed alpha
Helix 16	AB7	B	709	714	Right-handed alpha
Helix 17	AB8	B	716	725	Right-handed alpha
Helix 18	AB9	B	805	816	Right-handed alpha
Helix 19	AC1	B	817	819	Right-handed 310
Helix 20	AC2	B	830	846	Right-handed alpha

There are 9 sheets in PDB entry 9SHP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	456	first strand
Strand 2	B	112	117	anti-parallel
Strand 3	B	749	751	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	264	266	anti-parallel
Strand 3	B	257	259	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	444	445	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	171	first strand
Strand 2	B	131	134	anti-parallel
Strand 3	B	191	198	anti-parallel
Strand 4	B	180	185	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	232	234	anti-parallel
Strand 3	B	247	253	anti-parallel
Strand 4	B	270	276	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	B	389	390	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	464	first strand
Strand 2	B	469	470	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	534	first strand
Strand 2	B	498	501	parallel
Strand 3	B	557	561	parallel
Strand 4	B	584	588	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	664	first strand
Strand 2	B	646	651	anti-parallel
Strand 3	B	627	631	anti-parallel
Strand 4	B	697	702	parallel
Strand 5	B	737	742	parallel
Strand 6	B	793	800	anti-parallel
Strand 7	B	779	781	anti-parallel
Strand 8	B	764	766	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SHP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SHP