Analysis of interatomic Contacts of Structural Units in PDB entry:
9SHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SHY entry

There are 6 chains in PDB entry 9SHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4ASP 1132
L
 SER 19GLY 99
M
 GLU 36SER 125
N
 T 25 G 34
O
 SER 90LEU 238
B
 G 26 G 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 9SHY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 16Right-handed alpha
Helix 2
AA2
A
24 32Right-handed alpha
Helix 3
AA3
A
44 53Right-handed alpha
Helix 4
AA4
A
76 91Right-handed alpha
Helix 5
AA5
A
95 99Right-handed 310
Helix 6
AA6
A
125 134Right-handed alpha
Helix 7
AA7
A
134 155Right-handed alpha
Helix 8
AA8
A
329 332Right-handed 310
Helix 9
AA9
A
345 350Right-handed alpha
Helix 10
AB1
A
353 365Right-handed alpha
Helix 11
AB2
A
383 388Right-handed alpha
Helix 12
AB3
A
389 403Right-handed alpha
Helix 13
AB4
A
404 413Right-handed alpha
Helix 14
AB5
A
445 453Right-handed alpha
Helix 15
AB6
A
457 473Right-handed alpha
Helix 16
AB7
A
474 479Right-handed alpha
Helix 17
AB8
A
480 496Right-handed alpha
Helix 18
AB9
A
505 509Right-handed alpha
Helix 19
AC1
A
517 521Right-handed 310
Helix 20
AC2
A
530 551Right-handed alpha
Helix 21
AC3
A
551 560Right-handed alpha
Helix 22
AC4
A
578 596Right-handed alpha
Helix 23
AC5
A
602 612Right-handed alpha
Helix 24
AC6
A
638 642Right-handed 310
Helix 25
AC7
A
648 653Right-handed alpha
Helix 26
AC8
A
653 672Right-handed alpha
Helix 27
AC9
A
673 677Right-handed 310
Helix 28
AD1
A
682 698Right-handed alpha
Helix 29
AD2
A
721 733Right-handed alpha
Helix 30
AD3
A
772 784Right-handed alpha
Helix 31
AD4
A
801 815Right-handed alpha
Helix 32
AD5
A
837 854Right-handed alpha
Helix 33
AD6
A
854 859Right-handed alpha
Helix 34
AD7
A
876 889Right-handed alpha
Helix 35
AD8
A
899 902Right-handed 310
Helix 36
AD9
A
911 919Right-handed 310
Helix 37
AE1
A
946 950Right-handed 310
Helix 38
AE2
A
953 958Right-handed 310
Helix 39
AE3
A
965 980Right-handed alpha
Helix 40
AE4
A
983 988Right-handed alpha
Helix 41
AE5
A
993 1017Right-handed alpha
Helix 42
AE6
A
1024 1027Right-handed 310
Helix 43
AE7
A
1028 1050Right-handed alpha
Helix 44
AE8
A
1066 1085Right-handed alpha
Helix 45
AE9
A
1085 1107Right-handed alpha
Helix 46
AF1
A
1108 1120Right-handed alpha
Helix 47
AF2
L
28 38Right-handed alpha
Helix 48
AF3
L
46 73Right-handed alpha
Helix 49
AF4
L
80 91Right-handed alpha
Helix 50
AF5
L
91 99Right-handed alpha
Helix 51
AF6
M
38 50Right-handed alpha
Helix 52
AF7
M
56 85Right-handed alpha
Helix 53
AF8
M
91 103Right-handed alpha
Helix 54
AF9
M
106 125Right-handed alpha
Helix 55
AG1
O
98 104Right-handed alpha
Helix 56
AG2
O
158 164Right-handed alpha
Helix 57
AG3
O
169 173Right-handed 310
Helix 58
AG4
O
223 226Right-handed 310
Helix 59
AG5
O
227 238Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9SHY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
54 58anti-parallel
Strand 3
A
157 161anti-parallel
Strand 4
A
167 171anti-parallel
Strand 5
A
790 797parallel
Strand 6
A
739 749anti-parallel
Strand 7
A
755 765anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
120 121anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
502 504anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 564first strand
Strand 2
A
574 577anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 600first strand
Strand 2
A
823 827anti-parallel
Strand 3
A
817 820anti-parallel
Strand 4
A
618 626parallel
Strand 5
A
629 636anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
862 866first strand
Strand 2
A
869 874anti-parallel
Strand 3
A
707 712anti-parallel
Strand 4
A
904 905anti-parallel
Strand 5
A
920 921parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 930first strand
Strand 2
A
933 936anti-parallel
Strand 3
A
942 944anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
78 79first strand
Strand 2
M
54 55parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
113 123first strand
Strand 2
O
142 147anti-parallel
Strand 3
O
152 157anti-parallel
Strand 4
O
203 215parallel
Strand 5
O
180 190anti-parallel
Strand 6
O
113 123anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il