Analysis of interatomic Contacts of Structural Units in PDB entry:
9SI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SI0 entry

There are 6 chains in PDB entry 9SI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 SER 19GLY 99
M
 GLU 36SER 125
N
 G 24 A 33
O
 SER 90LEU 238
B
 G 26 G 333
A
 ALA 4ASP 1132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9SI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
30 38Right-handed alpha
Helix 2
AA2
L
46 74Right-handed alpha
Helix 3
AA3
L
80 91Right-handed alpha
Helix 4
AA4
L
91 99Right-handed alpha
Helix 5
AA5
M
38 50Right-handed alpha
Helix 6
AA6
M
56 86Right-handed alpha
Helix 7
AA7
M
91 103Right-handed alpha
Helix 8
AA8
M
104 125Right-handed alpha
Helix 9
AA9
O
97 104Right-handed alpha
Helix 10
AB1
O
158 165Right-handed alpha
Helix 11
AB2
O
169 173Right-handed 310
Helix 12
AB3
O
227 238Right-handed alpha
Helix 13
AB4
A
7 18Right-handed alpha
Helix 14
AB5
A
24 32Right-handed alpha
Helix 15
AB6
A
44 53Right-handed alpha
Helix 16
AB7
A
76 92Right-handed alpha
Helix 17
AB8
A
95 99Right-handed 310
Helix 18
AB9
A
125 133Right-handed alpha
Helix 19
AC1
A
134 145Right-handed alpha
Helix 20
AC2
A
145 155Right-handed alpha
Helix 21
AC3
A
345 350Right-handed alpha
Helix 22
AC4
A
353 367Right-handed alpha
Helix 23
AC5
A
383 388Right-handed alpha
Helix 24
AC6
A
389 403Right-handed alpha
Helix 25
AC7
A
404 413Right-handed alpha
Helix 26
AC8
A
445 452Right-handed alpha
Helix 27
AC9
A
457 473Right-handed alpha
Helix 28
AD1
A
480 495Right-handed alpha
Helix 29
AD2
A
505 509Right-handed alpha
Helix 30
AD3
A
517 521Right-handed 310
Helix 31
AD4
A
530 551Right-handed alpha
Helix 32
AD5
A
551 560Right-handed alpha
Helix 33
AD6
A
578 596Right-handed alpha
Helix 34
AD7
A
602 612Right-handed alpha
Helix 35
AD8
A
648 652Right-handed 310
Helix 36
AD9
A
653 655Right-handed 310
Helix 37
AE1
A
656 672Right-handed alpha
Helix 38
AE2
A
673 677Right-handed 310
Helix 39
AE3
A
682 700Right-handed alpha
Helix 40
AE4
A
721 733Right-handed alpha
Helix 41
AE5
A
765 769Right-handed 310
Helix 42
AE6
A
772 784Right-handed alpha
Helix 43
AE7
A
801 815Right-handed alpha
Helix 44
AE8
A
835 855Right-handed alpha
Helix 45
AE9
A
856 860Right-handed 310
Helix 46
AF1
A
876 890Right-handed alpha
Helix 47
AF2
A
899 902Right-handed 310
Helix 48
AF3
A
946 950Right-handed 310
Helix 49
AF4
A
953 958Right-handed 310
Helix 50
AF5
A
965 982Right-handed alpha
Helix 51
AF6
A
983 988Right-handed alpha
Helix 52
AF7
A
993 1017Right-handed alpha
Helix 53
AF8
A
1024 1027Right-handed 310
Helix 54
AF9
A
1028 1051Right-handed alpha
Helix 55
AG1
A
1066 1084Right-handed alpha
Helix 56
AG2
A
1085 1107Right-handed alpha
Helix 57
AG3
A
1108 1118Right-handed alpha
Helix 58
AG4
A
1124 1129Right-handed alpha
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There are 9 sheets in PDB entry 9SI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
113 123first strand
Strand 2
O
142 147anti-parallel
Strand 3
O
152 157anti-parallel
Strand 4
O
203 215parallel
Strand 5
O
180 190anti-parallel
Strand 6
O
113 123anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
54 58anti-parallel
Strand 3
A
157 161anti-parallel
Strand 4
A
167 169anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
119 121anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
502 504anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 565first strand
Strand 2
A
573 577anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 600first strand
Strand 2
A
823 826anti-parallel
Strand 3
A
817 820anti-parallel
Strand 4
A
618 625parallel
Strand 5
A
630 636anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
863 865first strand
Strand 2
A
870 874anti-parallel
Strand 3
A
707 711anti-parallel
Strand 4
A
904 905anti-parallel
Strand 5
A
920 921parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 764first strand
Strand 2
A
739 748anti-parallel
Strand 3
A
789 800anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 930first strand
Strand 2
A
933 936anti-parallel
Strand 3
A
942 944anti-parallel
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