Analysis of interatomic Contacts of Structural Units in PDB entry:
9SIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SIM entry

There is 1 chain in PDB entry 9SIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 239GLY 1070
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9SIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 248Right-handed alpha
Helix 2
AA2
A
249 251Right-handed 310
Helix 3
AA3
A
271 286Right-handed alpha
Helix 4
AA4
A
384 388Right-handed 310
Helix 5
AA5
A
431 435Right-handed 310
Helix 6
AA6
A
556 562Right-handed alpha
Helix 7
AA7
A
577 581Right-handed 310
Helix 8
AA8
A
635 640Right-handed alpha
Helix 9
AA9
A
721 725Right-handed 310
Helix 10
AB1
A
753 758Right-handed 310
Helix 11
AB2
A
791 803Right-handed alpha
Helix 12
AB3
A
815 823Right-handed alpha
Helix 13
AB4
A
924 928Right-handed 310
Helix 14
AB5
A
940 954Right-handed alpha
Helix 15
AB6
A
975 992Right-handed alpha
Helix 16
AB7
A
1004 1010Right-handed alpha
Helix 17
AB8
A
1016 1025Right-handed alpha
Helix 18
AB9
A
1029 1033Right-handed 310
Helix 19
AC1
A
1050 1066Right-handed alpha
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There are 12 sheets in PDB entry 9SIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
288 291parallel
Strand 3
A
307 311parallel
Strand 4
A
336 339parallel
Strand 5
A
367 369parallel
Strand 6
A
401 403parallel
Strand 7
A
422 424parallel
Strand 8
A
465 467parallel
Strand 9
A
492 494parallel
Strand 10
A
523 525parallel
Strand 11
A
546 548parallel
Strand 12
A
587 589parallel
Strand 13
A
617 619parallel
Strand 14
A
641 642parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 297first strand
Strand 2
A
317 320parallel
Strand 3
A
342 344parallel
Strand 4
A
372 374parallel
Strand 5
A
406 408parallel
Strand 6
A
427 429parallel
Strand 7
A
470 472parallel
Strand 8
A
497 499parallel
Strand 9
A
528 530parallel
Strand 10
A
551 553parallel
Strand 11
A
592 594parallel
Strand 12
A
622 624parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
329 331parallel
Strand 3
A
359 361parallel
Strand 4
A
391 395parallel
Strand 5
A
412 416parallel
Strand 6
A
451 453parallel
Strand 7
A
479 481parallel
Strand 8
A
504 509parallel
Strand 9
A
535 540parallel
Strand 10
A
569 575parallel
Strand 11
A
604 609parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 462first strand
Strand 2
A
487 489parallel
Strand 3
A
518 520parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
648 650first strand
Strand 2
A
666 672anti-parallel
Strand 3
A
675 691anti-parallel
Strand 4
A
658 662anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
648 650first strand
Strand 2
A
666 672anti-parallel
Strand 3
A
675 691anti-parallel
Strand 4
A
763 772anti-parallel
Strand 5
A
707 718anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 654first strand
Strand 2
A
694 697anti-parallel
Strand 3
A
740 746anti-parallel
Strand 4
A
728 733anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 654first strand
Strand 2
A
694 697anti-parallel
Strand 3
A
740 746anti-parallel
Strand 4
A
749 751anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 808first strand
Strand 2
A
781 785parallel
Strand 3
A
929 933parallel
Strand 4
A
960 962parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 850first strand
Strand 2
A
881 888anti-parallel
Strand 3
A
866 876anti-parallel
Strand 4
A
859 863anti-parallel
Strand 5
A
901 905anti-parallel
Strand 6
A
828 832anti-parallel
Strand 7
A
842 846anti-parallel
Strand 8
A
881 888anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
836 837first strand
Strand 2
A
895 896anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
998 999first strand
Strand 2
A
1002 1003anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il