Analysis of interatomic Contacts of Structural Units in PDB entry:
9SJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SJ2 entry

There are 5 chains in PDB entry 9SJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLN 1SER 163
D
 GLN 1SER 163
E
 GLN 1SER 163
B
 GLN 1SER 163
A
 ALA 10SER 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9SJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
93 98Right-handed alpha
Helix 2
AA2
D
93 98Right-handed alpha
Helix 3
AA3
E
93 98Right-handed alpha
Helix 4
AA4
B
93 98Right-handed alpha
Helix 5
AA5
A
93 98Right-handed alpha
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There are 20 sheets in PDB entry 9SJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 43first strand
Strand 2
B
53 61anti-parallel
Strand 3
C
3 14parallel
Strand 4
B
154 160anti-parallel
Strand 5
B
81 87anti-parallel
Strand 6
B
116 120anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 43first strand
Strand 2
B
53 61anti-parallel
Strand 3
C
3 14parallel
Strand 4
B
148 150anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 22first strand
Strand 2
C
66 74anti-parallel
Strand 3
C
29 31anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 22first strand
Strand 2
C
66 74anti-parallel
Strand 3
C
125 133anti-parallel
Strand 4
C
101 105anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 43first strand
Strand 2
C
53 61anti-parallel
Strand 3
D
3 14parallel
Strand 4
C
154 160anti-parallel
Strand 5
C
81 87anti-parallel
Strand 6
C
116 120anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 43first strand
Strand 2
C
53 61anti-parallel
Strand 3
D
3 14parallel
Strand 4
C
148 150anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 22first strand
Strand 2
D
66 74anti-parallel
Strand 3
D
29 31anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 22first strand
Strand 2
D
66 74anti-parallel
Strand 3
D
125 133anti-parallel
Strand 4
D
101 105anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 43first strand
Strand 2
D
53 61anti-parallel
Strand 3
E
3 14parallel
Strand 4
D
154 160anti-parallel
Strand 5
D
81 87anti-parallel
Strand 6
D
116 120anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 43first strand
Strand 2
D
53 61anti-parallel
Strand 3
E
3 14parallel
Strand 4
D
148 150anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 22first strand
Strand 2
E
66 74anti-parallel
Strand 3
E
29 31anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 22first strand
Strand 2
E
66 74anti-parallel
Strand 3
E
125 133anti-parallel
Strand 4
E
101 105anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 43first strand
Strand 2
E
53 59anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
116 120first strand
Strand 2
E
81 87anti-parallel
Strand 3
E
154 160anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 43first strand
Strand 2
A
53 61anti-parallel
Strand 3
B
3 14parallel
Strand 4
A
154 160anti-parallel
Strand 5
A
81 87anti-parallel
Strand 6
A
116 120anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 43first strand
Strand 2
A
53 61anti-parallel
Strand 3
B
3 14parallel
Strand 4
A
148 150anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
66 74anti-parallel
Strand 3
B
29 31anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
66 74anti-parallel
Strand 3
B
125 133anti-parallel
Strand 4
B
101 105anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
29 31anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
125 133anti-parallel
Strand 4
A
101 105anti-parallel
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