Analysis of interatomic Contacts of Structural Units in PDB entry:
9SJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SJ6 entry

There are 4 chains in PDB entry 9SJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 5	THR 65
B	ASN 5	THR 65
C	VAL 68	THR 537
D	GLN 69	GLU 538

There are 28 helices in PDB entry 9SJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	17	Right-handed 310
Helix 2	AA2	A	18	23	Right-handed alpha
Helix 3	AA3	A	44	50	Right-handed alpha
Helix 4	AA4	B	17	24	Right-handed alpha
Helix 5	AA5	B	44	50	Right-handed alpha
Helix 6	AA6	C	69	74	Right-handed alpha
Helix 7	AA7	C	75	84	Right-handed alpha
Helix 8	AA8	C	103	107	Right-handed 310
Helix 9	AA9	C	139	147	Right-handed alpha
Helix 10	AB1	C	157	172	Right-handed alpha
Helix 11	AB2	C	193	210	Right-handed alpha
Helix 12	AB3	C	231	242	Right-handed alpha
Helix 13	AB4	C	379	383	Right-handed 310
Helix 14	AB5	C	428	432	Right-handed 310
Helix 15	AB6	C	459	479	Right-handed alpha
Helix 16	AB7	C	488	500	Right-handed alpha
Helix 17	AB8	C	524	530	Right-handed alpha
Helix 18	AB9	D	70	74	Right-handed alpha
Helix 19	AC1	D	75	84	Right-handed alpha
Helix 20	AC2	D	103	107	Right-handed 310
Helix 21	AC3	D	139	147	Right-handed alpha
Helix 22	AC4	D	157	172	Right-handed alpha
Helix 23	AC5	D	193	211	Right-handed alpha
Helix 24	AC6	D	231	242	Right-handed alpha
Helix 25	AC7	D	379	383	Right-handed 310
Helix 26	AC8	D	459	479	Right-handed alpha
Helix 27	AC9	D	488	500	Right-handed alpha
Helix 28	AD1	D	524	530	Right-handed alpha

There are 12 sheets in PDB entry 9SJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	34	39	anti-parallel
Strand 3	A	6	12	anti-parallel
Strand 4	A	54	58	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	D	191	192	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	6	12	anti-parallel
Strand 4	B	54	58	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	C	191	192	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	138	first strand
Strand 2	C	115	120	anti-parallel
Strand 3	C	176	181	parallel
Strand 4	C	91	96	parallel
Strand 5	C	214	218	parallel
Strand 6	C	246	251	parallel
Strand 7	C	408	413	parallel
Strand 8	C	438	441	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	265	first strand
Strand 2	C	372	376	anti-parallel
Strand 3	C	284	291	anti-parallel
Strand 4	C	344	349	anti-parallel
Strand 5	C	326	332	anti-parallel
Strand 6	C	319	323	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	302	first strand
Strand 2	C	357	367	anti-parallel
Strand 3	C	272	278	anti-parallel
Strand 4	C	388	389	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	448	first strand
Strand 2	C	454	457	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	138	first strand
Strand 2	D	115	120	anti-parallel
Strand 3	D	176	181	parallel
Strand 4	D	91	96	parallel
Strand 5	D	214	218	parallel
Strand 6	D	246	251	parallel
Strand 7	D	408	413	parallel
Strand 8	D	438	441	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	265	first strand
Strand 2	D	372	376	anti-parallel
Strand 3	D	284	291	anti-parallel
Strand 4	D	344	349	anti-parallel
Strand 5	D	326	332	anti-parallel
Strand 6	D	319	323	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	302	first strand
Strand 2	D	357	367	anti-parallel
Strand 3	D	272	278	anti-parallel
Strand 4	D	388	389	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	448	first strand
Strand 2	D	454	457	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SJ6