Analysis of interatomic Contacts of Structural Units in PDB entry:
9SJ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SJ9 entry

There are 2 chains in PDB entry 9SJ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	LEU 557
B	LEU 587	ARG 1132

There are 30 helices in PDB entry 9SJ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed alpha
Helix 2	AA2	A	42	49	Right-handed 310
Helix 3	AA3	A	76	82	Right-handed alpha
Helix 4	AA4	A	83	88	Right-handed alpha
Helix 5	AA5	A	112	116	Right-handed 310
Helix 6	AA6	A	149	159	Right-handed alpha
Helix 7	AA7	A	169	180	Right-handed alpha
Helix 8	AA8	A	185	189	Right-handed 310
Helix 9	AA9	A	218	236	Right-handed alpha
Helix 10	AB1	A	256	266	Right-handed 310
Helix 11	AB2	A	403	407	Right-handed 310
Helix 12	AB3	A	423	427	Right-handed 310
Helix 13	AB4	A	483	506	Right-handed alpha
Helix 14	AB5	A	508	513	Right-handed 310
Helix 15	AB6	A	514	525	Right-handed alpha
Helix 16	AB7	A	545	557	Right-handed alpha
Helix 17	AB8	B	597	605	Right-handed alpha
Helix 18	AB9	B	606	609	Right-handed 310
Helix 19	AC1	B	629	636	Right-handed alpha
Helix 20	AC2	B	670	677	Right-handed alpha
Helix 21	AC3	B	700	704	Right-handed 310
Helix 22	AC4	B	736	746	Right-handed alpha
Helix 23	AC5	B	756	767	Right-handed alpha
Helix 24	AC6	B	798	816	Right-handed alpha
Helix 25	AC7	B	841	845	Right-handed 310
Helix 26	AC8	B	982	986	Right-handed 310
Helix 27	AC9	B	1062	1082	Right-handed alpha
Helix 28	AD1	B	1087	1091	Right-handed 310
Helix 29	AD2	B	1092	1103	Right-handed alpha
Helix 30	AD3	B	1123	1132	Right-handed alpha

There are 14 sheets in PDB entry 9SJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	32	37	anti-parallel
Strand 3	A	3	9	anti-parallel
Strand 4	A	52	57	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	214	217	anti-parallel
Strand 3	A	60	63	anti-parallel
Strand 4	A	245	246	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	477	482	anti-parallel
Strand 3	A	469	473	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	196	201	parallel
Strand 4	A	100	105	parallel
Strand 5	A	239	243	parallel
Strand 6	A	269	274	parallel
Strand 7	A	432	438	parallel
Strand 8	A	443	444	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	196	201	parallel
Strand 4	A	100	105	parallel
Strand 5	A	239	243	parallel
Strand 6	A	269	274	parallel
Strand 7	A	432	438	parallel
Strand 8	A	462	465	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	288	first strand
Strand 2	A	396	400	anti-parallel
Strand 3	A	307	314	anti-parallel
Strand 4	A	370	376	anti-parallel
Strand 5	A	353	360	anti-parallel
Strand 6	A	343	348	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	325	first strand
Strand 2	A	381	391	anti-parallel
Strand 3	A	295	302	anti-parallel
Strand 4	A	412	413	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	611	615	first strand
Strand 2	B	618	622	anti-parallel
Strand 3	B	589	594	anti-parallel
Strand 4	B	640	645	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	797	first strand
Strand 2	B	648	651	anti-parallel
Strand 3	B	825	826	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	657	first strand
Strand 2	B	1056	1061	anti-parallel
Strand 3	B	1048	1052	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	735	first strand
Strand 2	B	712	717	anti-parallel
Strand 3	B	783	788	parallel
Strand 4	B	688	693	parallel
Strand 5	B	819	823	parallel
Strand 6	B	848	853	parallel
Strand 7	B	1011	1017	parallel
Strand 8	B	1022	1023	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	735	first strand
Strand 2	B	712	717	anti-parallel
Strand 3	B	783	788	parallel
Strand 4	B	688	693	parallel
Strand 5	B	819	823	parallel
Strand 6	B	848	853	parallel
Strand 7	B	1011	1017	parallel
Strand 8	B	1041	1044	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	863	867	first strand
Strand 2	B	975	979	anti-parallel
Strand 3	B	889	894	anti-parallel
Strand 4	B	948	955	anti-parallel
Strand 5	B	932	939	anti-parallel
Strand 6	B	920	927	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	899	905	first strand
Strand 2	B	960	970	anti-parallel
Strand 3	B	874	881	anti-parallel
Strand 4	B	991	992	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SJ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SJ9