Analysis of interatomic Contacts of Structural Units in PDB entry:
9SJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SJF entry

There are 2 chains in PDB entry 9SJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 27	GLU 594
B	GLY 27	GLU 594

There are 28 helices in PDB entry 9SJF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	148	162	Right-handed alpha
Helix 2	AA2	A	201	214	Right-handed alpha
Helix 3	AA3	A	230	235	Right-handed 310
Helix 4	AA4	A	237	241	Right-handed 310
Helix 5	AA5	A	271	289	Right-handed alpha
Helix 6	AA6	A	314	330	Right-handed alpha
Helix 7	AA7	A	344	351	Right-handed alpha
Helix 8	AA8	A	362	366	Right-handed 310
Helix 9	AA9	A	367	382	Right-handed alpha
Helix 10	AB1	A	397	401	Right-handed 310
Helix 11	AB2	A	406	420	Right-handed alpha
Helix 12	AB3	A	446	463	Right-handed alpha
Helix 13	AB4	A	463	468	Right-handed alpha
Helix 14	AB5	A	559	563	Right-handed 310
Helix 15	AB6	B	148	162	Right-handed alpha
Helix 16	AB7	B	201	214	Right-handed alpha
Helix 17	AB8	B	230	235	Right-handed 310
Helix 18	AB9	B	237	241	Right-handed 310
Helix 19	AC1	B	271	289	Right-handed alpha
Helix 20	AC2	B	314	330	Right-handed alpha
Helix 21	AC3	B	344	351	Right-handed alpha
Helix 22	AC4	B	362	366	Right-handed 310
Helix 23	AC5	B	367	382	Right-handed alpha
Helix 24	AC6	B	397	401	Right-handed 310
Helix 25	AC7	B	406	420	Right-handed alpha
Helix 26	AC8	B	446	463	Right-handed alpha
Helix 27	AC9	B	463	468	Right-handed alpha
Helix 28	AD1	B	559	563	Right-handed 310

There are 20 sheets in PDB entry 9SJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	569	572	anti-parallel
Strand 3	A	575	583	anti-parallel
Strand 4	A	536	544	anti-parallel
Strand 5	A	478	480	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	116	127	parallel
Strand 3	A	103	113	anti-parallel
Strand 4	A	73	78	anti-parallel
Strand 5	A	81	87	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	59	64	anti-parallel
Strand 3	A	92	96	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	140	first strand
Strand 2	A	166	169	parallel
Strand 3	A	217	223	parallel
Strand 4	A	293	297	parallel
Strand 5	A	334	340	parallel
Strand 6	A	357	360	parallel
Strand 7	A	388	391	parallel
Strand 8	A	424	425	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	186	187	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	192	first strand
Strand 2	A	198	200	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	264	266	anti-parallel
Strand 3	A	253	254	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	443	444	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	474	first strand
Strand 2	A	497	504	anti-parallel
Strand 3	A	487	489	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	474	first strand
Strand 2	A	497	504	anti-parallel
Strand 3	A	507	514	anti-parallel
Strand 4	A	586	593	anti-parallel
Strand 5	A	549	555	anti-parallel
Strand 6	A	565	567	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	569	572	anti-parallel
Strand 3	B	575	583	anti-parallel
Strand 4	B	536	544	anti-parallel
Strand 5	B	478	480	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	116	127	parallel
Strand 3	B	103	113	anti-parallel
Strand 4	B	73	78	anti-parallel
Strand 5	B	81	87	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	59	64	anti-parallel
Strand 3	B	92	96	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	166	169	parallel
Strand 3	B	217	223	parallel
Strand 4	B	293	297	parallel
Strand 5	B	334	340	parallel
Strand 6	B	357	360	parallel
Strand 7	B	388	391	parallel
Strand 8	B	424	425	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	186	187	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	192	first strand
Strand 2	B	198	200	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	264	266	anti-parallel
Strand 3	B	253	254	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	443	444	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	474	first strand
Strand 2	B	497	504	anti-parallel
Strand 3	B	487	489	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	474	first strand
Strand 2	B	497	504	anti-parallel
Strand 3	B	507	514	anti-parallel
Strand 4	B	586	593	anti-parallel
Strand 5	B	549	555	anti-parallel
Strand 6	B	565	567	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SJF