Analysis of interatomic Contacts of Structural Units in PDB entry:
9SJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SJI entry

There is 1 chain in PDB entry 9SJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 155GLN 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9SJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
171 175Right-handed 310
Helix 2
AA2
A
214 217Right-handed 310
Helix 3
AA3
A
320 322Right-handed 310
Helix 4
AA4
A
351 355Right-handed 310
Helix 5
AA5
A
461 466Right-handed alpha
Helix 6
AA6
A
472 476Right-handed 310
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There are 9 sheets in PDB entry 9SJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
160 162anti-parallel
Strand 3
A
195 202anti-parallel
Strand 4
A
205 212anti-parallel
Strand 5
A
222 225anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
160 162anti-parallel
Strand 3
A
195 202anti-parallel
Strand 4
A
235 237anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
185 192anti-parallel
Strand 3
A
241 248anti-parallel
Strand 4
A
253 259anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
270 273anti-parallel
Strand 3
A
309 313anti-parallel
Strand 4
A
324 326anti-parallel
Strand 5
A
340 341anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
270 273anti-parallel
Strand 3
A
309 313anti-parallel
Strand 4
A
348 349anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
295 302anti-parallel
Strand 3
A
357 364anti-parallel
Strand 4
A
371 376anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
384 386anti-parallel
Strand 3
A
421 426anti-parallel
Strand 4
A
437 439anti-parallel
Strand 5
A
455 457anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
384 386anti-parallel
Strand 3
A
421 426anti-parallel
Strand 4
A
480 482anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
411 418anti-parallel
Strand 3
A
486 493anti-parallel
Strand 4
A
498 503anti-parallel
Strand 5
A
452 453anti-parallel
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