Analysis of interatomic Contacts of Structural Units in PDB entry:
9SJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SJK entry

There are 2 chains in PDB entry 9SJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 36HIS 504
B
 GLU 36HIS 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9SJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 48Right-handed alpha
Helix 2
AA2
A
49 55Right-handed 310
Helix 3
AA3
A
65 70Right-handed alpha
Helix 4
AA4
A
83 91Right-handed alpha
Helix 5
AA5
A
98 122Right-handed alpha
Helix 6
AA6
A
128 155Right-handed alpha
Helix 7
AA7
A
176 195Right-handed alpha
Helix 8
AA8
A
197 201Right-handed 310
Helix 9
AA9
A
210 226Right-handed alpha
Helix 10
AB1
A
227 230Right-handed 310
Helix 11
AB2
A
231 245Right-handed alpha
Helix 12
AB3
A
249 253Right-handed 310
Helix 13
AB4
A
254 260Right-handed 310
Helix 14
AB5
A
292 298Right-handed alpha
Helix 15
AB6
A
315 321Right-handed alpha
Helix 16
AB7
A
328 332Right-handed alpha
Helix 17
AB8
A
347 351Right-handed 310
Helix 18
AB9
A
382 396Right-handed alpha
Helix 19
AC1
A
398 413Right-handed alpha
Helix 20
AC2
A
423 439Right-handed alpha
Helix 21
AC3
A
444 451Right-handed alpha
Helix 22
AC4
A
452 454Right-handed 310
Helix 23
AC5
A
455 465Right-handed alpha
Helix 24
AC6
A
472 476Right-handed 310
Helix 25
AC7
A
480 487Right-handed alpha
Helix 26
AC8
B
38 48Right-handed alpha
Helix 27
AC9
B
49 55Right-handed 310
Helix 28
AD1
B
61 70Right-handed alpha
Helix 29
AD2
B
83 91Right-handed alpha
Helix 30
AD3
B
98 122Right-handed alpha
Helix 31
AD4
B
128 155Right-handed alpha
Helix 32
AD5
B
176 195Right-handed alpha
Helix 33
AD6
B
197 201Right-handed 310
Helix 34
AD7
B
210 226Right-handed alpha
Helix 35
AD8
B
227 230Right-handed 310
Helix 36
AD9
B
231 245Right-handed alpha
Helix 37
AE1
B
249 253Right-handed 310
Helix 38
AE2
B
254 260Right-handed 310
Helix 39
AE3
B
292 298Right-handed alpha
Helix 40
AE4
B
315 321Right-handed alpha
Helix 41
AE5
B
328 332Right-handed alpha
Helix 42
AE6
B
347 351Right-handed 310
Helix 43
AE7
B
382 396Right-handed alpha
Helix 44
AE8
B
398 413Right-handed alpha
Helix 45
AE9
B
423 439Right-handed alpha
Helix 46
AF1
B
444 451Right-handed alpha
Helix 47
AF2
B
452 454Right-handed 310
Helix 48
AF3
B
455 465Right-handed alpha
Helix 49
AF4
B
472 476Right-handed 310
Helix 50
AF5
B
480 487Right-handed alpha
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There are 6 sheets in PDB entry 9SJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
311 314anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
377 381anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
356 357anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
311 314anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 273first strand
Strand 2
B
377 381anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 334first strand
Strand 2
B
356 357anti-parallel
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