Analysis of interatomic Contacts of Structural Units in PDB entry:
9SK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SK0 entry

There are 2 chains in PDB entry 9SK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 439
B
 LEU 3GLN 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9SK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 17Right-handed alpha
Helix 2
AA2
A
21 41Right-handed alpha
Helix 3
AA3
A
47 64Right-handed alpha
Helix 4
AA4
A
92 96Right-handed 310
Helix 5
AA5
A
104 113Right-handed alpha
Helix 6
AA6
A
124 128Right-handed 310
Helix 7
AA7
A
154 163Right-handed alpha
Helix 8
AA8
A
178 186Right-handed alpha
Helix 9
AA9
A
223 225Right-handed 310
Helix 10
AB1
A
226 235Right-handed alpha
Helix 11
AB2
A
261 278Right-handed alpha
Helix 12
AB3
A
291 311Right-handed alpha
Helix 13
AB4
A
312 318Right-handed 310
Helix 14
AB5
A
320 343Right-handed alpha
Helix 15
AB6
A
364 367Right-handed 310
Helix 16
AB7
A
381 391Right-handed alpha
Helix 17
AB8
A
419 436Right-handed alpha
Helix 18
AB9
A
437 439Right-handed 310
Helix 19
AC1
B
7 17Right-handed alpha
Helix 20
AC2
B
21 41Right-handed alpha
Helix 21
AC3
B
47 64Right-handed alpha
Helix 22
AC4
B
92 96Right-handed 310
Helix 23
AC5
B
104 113Right-handed alpha
Helix 24
AC6
B
124 128Right-handed 310
Helix 25
AC7
B
154 163Right-handed alpha
Helix 26
AC8
B
178 186Right-handed alpha
Helix 27
AC9
B
223 225Right-handed 310
Helix 28
AD1
B
226 235Right-handed alpha
Helix 29
AD2
B
261 278Right-handed alpha
Helix 30
AD3
B
291 311Right-handed alpha
Helix 31
AD4
B
312 318Right-handed 310
Helix 32
AD5
B
320 343Right-handed alpha
Helix 33
AD6
B
364 367Right-handed 310
Helix 34
AD7
B
382 391Right-handed alpha
Helix 35
AD8
B
419 435Right-handed alpha
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There are 10 sheets in PDB entry 9SK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
116 121anti-parallel
Strand 3
A
74 78parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
138 139anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
145 149anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 173first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
188 191anti-parallel
Strand 4
A
396 404anti-parallel
Strand 5
A
407 414anti-parallel
Strand 6
A
347 350anti-parallel
Strand 7
A
248 251parallel
Strand 8
A
281 283parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 372first strand
Strand 2
A
375 378anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
116 121anti-parallel
Strand 3
B
74 78parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
138 139anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
145 149anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 173first strand
Strand 2
B
216 221anti-parallel
Strand 3
B
188 191anti-parallel
Strand 4
B
396 404anti-parallel
Strand 5
B
407 414anti-parallel
Strand 6
B
347 350anti-parallel
Strand 7
B
248 251parallel
Strand 8
B
281 283parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 372first strand
Strand 2
B
375 378anti-parallel
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