Analysis of interatomic Contacts of Structural Units in PDB entry:
9SKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SKQ entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 9SKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 ALA 244PRO 308
I
 MET 1SER 282
J
 ALA 9PHE 346
A
 ASP 3TYR 160
A
 HIS 162ASN 288
B
 ALA 162VAL 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 9SKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
263 267Right-handed 310
Helix 2
AA2
H
271 275Right-handed 310
Helix 3
AA3
H
279 286Right-handed alpha
Helix 4
AA4
H
288 301Right-handed alpha
Helix 5
AA5
I
5 11Right-handed alpha
Helix 6
AA6
I
15 38Right-handed alpha
Helix 7
AA7
I
49 69Right-handed alpha
Helix 8
AA8
I
76 93Right-handed alpha
Helix 9
AA9
I
100 116Right-handed alpha
Helix 10
AB1
I
121 129Right-handed alpha
Helix 11
AB2
I
133 154Right-handed alpha
Helix 12
AB3
I
163 178Right-handed alpha
Helix 13
AB4
I
183 186Right-handed 310
Helix 14
AB5
I
187 201Right-handed alpha
Helix 15
AB6
I
202 206Right-handed 310
Helix 16
AB7
I
208 224Right-handed alpha
Helix 17
AB8
I
228 234Right-handed alpha
Helix 18
AB9
I
241 262Right-handed alpha
Helix 19
AC1
I
266 282Right-handed alpha
Helix 20
AC2
J
56 67Right-handed alpha
Helix 21
AC3
J
98 104Right-handed alpha
Helix 22
AC4
J
110 131Right-handed alpha
Helix 23
AC5
J
139 141Right-handed 310
Helix 24
AC6
J
155 159Right-handed 310
Helix 25
AC7
J
175 179Right-handed 310
Helix 26
AC8
J
180 186Right-handed alpha
Helix 27
AC9
J
192 209Right-handed alpha
Helix 28
AD1
J
217 230Right-handed alpha
Helix 29
AD2
J
233 237Right-handed 310
Helix 30
AD3
J
239 243Right-handed 310
Helix 31
AD4
J
256 261Right-handed alpha
Helix 32
AD5
J
265 276Right-handed alpha
Helix 33
AD6
J
285 291Right-handed alpha
Helix 34
AD7
J
292 297Right-handed alpha
Helix 35
AD8
J
303 307Right-handed 310
Helix 36
AD9
A
45 58Right-handed alpha
Helix 37
AE1
A
87 94Right-handed alpha
Helix 38
AE2
A
101 122Right-handed alpha
Helix 39
AE3
A
171 176Right-handed alpha
Helix 40
AE4
A
184 200Right-handed alpha
Helix 41
AE5
A
208 221Right-handed alpha
Helix 42
AE6
A
249 254Right-handed alpha
Helix 43
AE7
A
257 268Right-handed alpha
Helix 44
AE8
A
277 282Right-handed alpha
Helix 45
AE9
A
283 288Right-handed 310
Helix 46
AF1
B
170 185Right-handed alpha
Helix 47
AF2
B
198 216Right-handed alpha
Helix 48
AF3
B
219 235Right-handed alpha
Helix 49
AF4
B
240 242Right-handed 310
Helix 50
AF5
B
243 260Right-handed alpha
Helix 51
AF6
B
265 272Right-handed alpha
Helix 52
AF7
B
280 294Right-handed alpha
Helix 53
AF8
B
301 313Right-handed alpha
Helix 54
AF9
B
316 331Right-handed alpha
Helix 55
AG1
B
340 356Right-handed alpha
Helix 56
AG2
B
362 364Right-handed 310
Helix 57
AG3
B
365 370Right-handed alpha
Helix 58
AG4
B
376 392Right-handed alpha
Helix 59
AG5
B
397 402Right-handed alpha
Helix 60
AG6
B
411 419Right-handed 310
Helix 61
AG7
B
420 429Right-handed alpha
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There are 6 sheets in PDB entry 9SKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
19 20first strand
Strand 2
J
24 30anti-parallel
Strand 3
J
37 43anti-parallel
Strand 4
J
88 92anti-parallel
Strand 5
J
77 79anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
96 97first strand
Strand 2
J
143 145anti-parallel
Strand 3
J
152 153anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
133 134first strand
Strand 2
J
160 161anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
18 22anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
75 80anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
134 136anti-parallel
Strand 3
A
142 144anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
151 152anti-parallel
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