Analysis of interatomic Contacts of Structural Units in PDB entry:
9SL1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SL1 entry

There are 9 chains in PDB entry 9SL1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 11	LYS 417
B	GLY 7	VAL 447
C	GLU 11	LYS 417
D	ASN 8	VAL 447
E	PRO 18	ALA 417
F	GLN 1	SER 517
G	GLN 1	SER 123
H	GLN 1	SER 517
I	GLN 1	SER 123

There are 55 helices in PDB entry 9SL1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	22	Right-handed alpha
Helix 2	AA2	A	71	74	Right-handed 310
Helix 3	AA3	A	85	90	Right-handed 310
Helix 4	AA4	A	180	184	Right-handed 310
Helix 5	AA5	A	221	228	Right-handed alpha
Helix 6	AA6	A	228	242	Right-handed alpha
Helix 7	AA7	A	243	245	Right-handed 310
Helix 8	AA8	A	249	272	Right-handed alpha
Helix 9	AA9	A	282	308	Right-handed alpha
Helix 10	AB1	A	312	415	Right-handed alpha
Helix 11	AB2	B	8	21	Right-handed alpha
Helix 12	AB3	B	70	73	Right-handed 310
Helix 13	AB4	B	84	90	Right-handed 310
Helix 14	AB5	B	170	173	Right-handed 310
Helix 15	AB6	B	218	225	Right-handed alpha
Helix 16	AB7	B	225	238	Right-handed alpha
Helix 17	AB8	B	239	241	Right-handed 310
Helix 18	AB9	B	246	269	Right-handed alpha
Helix 19	AC1	B	279	307	Right-handed alpha
Helix 20	AC2	B	418	447	Right-handed alpha
Helix 21	AC3	C	12	21	Right-handed alpha
Helix 22	AC4	C	71	74	Right-handed 310
Helix 23	AC5	C	85	92	Right-handed 310
Helix 24	AC6	C	140	144	Right-handed 310
Helix 25	AC7	C	180	184	Right-handed 310
Helix 26	AC8	C	221	228	Right-handed alpha
Helix 27	AC9	C	228	242	Right-handed alpha
Helix 28	AD1	C	243	245	Right-handed 310
Helix 29	AD2	C	249	270	Right-handed alpha
Helix 30	AD3	C	282	312	Right-handed alpha
Helix 31	AD4	C	312	416	Right-handed alpha
Helix 32	AD5	D	9	21	Right-handed alpha
Helix 33	AD6	D	70	72	Right-handed 310
Helix 34	AD7	D	84	91	Right-handed 310
Helix 35	AD8	D	170	173	Right-handed 310
Helix 36	AD9	D	218	225	Right-handed alpha
Helix 37	AE1	D	225	242	Right-handed alpha
Helix 38	AE2	D	246	270	Right-handed alpha
Helix 39	AE3	D	279	307	Right-handed alpha
Helix 40	AE4	D	422	447	Right-handed alpha
Helix 41	AE5	E	19	25	Right-handed alpha
Helix 42	AE6	E	88	95	Right-handed 310
Helix 43	AE7	E	175	180	Right-handed alpha
Helix 44	AE8	E	223	230	Right-handed alpha
Helix 45	AE9	E	230	244	Right-handed alpha
Helix 46	AF1	E	245	247	Right-handed 310
Helix 47	AF2	E	251	275	Right-handed alpha
Helix 48	AF3	E	284	311	Right-handed alpha
Helix 49	AF4	E	314	416	Right-handed alpha
Helix 50	AF5	F	415	417	Right-handed 310
Helix 51	AF6	F	475	479	Right-handed 310
Helix 52	AF7	G	87	91	Right-handed 310
Helix 53	AF8	H	415	417	Right-handed 310
Helix 54	AF9	H	475	479	Right-handed 310
Helix 55	AG1	I	87	91	Right-handed 310

There are 28 sheets in PDB entry 9SL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	117	120	anti-parallel
Strand 3	A	124	136	anti-parallel
Strand 4	A	57	69	anti-parallel
Strand 5	A	37	52	anti-parallel
Strand 6	A	165	169	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	124	136	anti-parallel
Strand 3	A	57	69	anti-parallel
Strand 4	A	37	52	anti-parallel
Strand 5	A	177	178	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	148	157	anti-parallel
Strand 3	A	207	219	anti-parallel
Strand 4	A	189	202	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	36	51	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	204	216	anti-parallel
Strand 4	B	186	199	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	115	120	anti-parallel
Strand 3	C	124	136	anti-parallel
Strand 4	C	57	69	anti-parallel
Strand 5	C	37	52	anti-parallel
Strand 6	C	165	169	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	107	first strand
Strand 2	C	124	136	anti-parallel
Strand 3	C	57	69	anti-parallel
Strand 4	C	37	52	anti-parallel
Strand 5	C	177	178	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	99	first strand
Strand 2	C	150	157	anti-parallel
Strand 3	C	206	219	anti-parallel
Strand 4	C	189	203	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	123	135	anti-parallel
Strand 4	D	56	68	anti-parallel
Strand 5	D	36	51	anti-parallel
Strand 6	D	164	168	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	106	first strand
Strand 2	D	123	135	anti-parallel
Strand 3	D	56	68	anti-parallel
Strand 4	D	36	51	anti-parallel
Strand 5	D	175	176	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	I	101	102	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	204	216	anti-parallel
Strand 4	D	186	199	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	87	first strand
Strand 2	E	118	122	anti-parallel
Strand 3	E	127	139	anti-parallel
Strand 4	E	105	110	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	87	first strand
Strand 2	E	118	122	anti-parallel
Strand 3	E	127	139	anti-parallel
Strand 4	E	60	72	anti-parallel
Strand 5	E	40	55	anti-parallel
Strand 6	E	168	172	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	151	160	anti-parallel
Strand 3	E	212	221	anti-parallel
Strand 4	E	190	200	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	405	412	anti-parallel
Strand 3	F	466	471	anti-parallel
Strand 4	F	457	461	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	446	448	first strand
Strand 2	F	432	438	anti-parallel
Strand 3	F	419	426	anti-parallel
Strand 4	F	480	488	anti-parallel
Strand 5	F	506	507	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	446	448	first strand
Strand 2	F	432	438	anti-parallel
Strand 3	F	419	426	anti-parallel
Strand 4	F	480	488	anti-parallel
Strand 5	F	511	513	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	69	73	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	121	122	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	34	38	anti-parallel
Strand 4	G	92	97	anti-parallel
Strand 5	G	117	119	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	405	412	anti-parallel
Strand 3	H	466	471	anti-parallel
Strand 4	H	456	461	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	446	448	first strand
Strand 2	H	432	438	anti-parallel
Strand 3	H	419	426	anti-parallel
Strand 4	H	480	488	anti-parallel
Strand 5	H	506	507	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	446	448	first strand
Strand 2	H	432	438	anti-parallel
Strand 3	H	419	426	anti-parallel
Strand 4	H	480	488	anti-parallel
Strand 5	H	511	513	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	69	73	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	121	122	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	34	38	anti-parallel
Strand 4	I	92	97	anti-parallel
Strand 5	I	117	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SL1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SL1