Analysis of interatomic Contacts of Structural Units in PDB entry:
9SLQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SLQ entry

There are 4 chains in PDB entry 9SLQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	SER 429
B	THR 2	SER 429
C	THR 2	SER 429
D	THR 2	PHE 31

There are 93 helices in PDB entry 9SLQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	60	Right-handed 310
Helix 2	AA2	A	62	72	Right-handed alpha
Helix 3	AA3	A	72	78	Right-handed alpha
Helix 4	AA4	A	84	97	Right-handed alpha
Helix 5	AA5	A	105	124	Right-handed alpha
Helix 6	AA6	A	127	137	Right-handed alpha
Helix 7	AA7	A	154	157	Right-handed 310
Helix 8	AA8	A	175	199	Right-handed alpha
Helix 9	AA9	A	200	204	Right-handed 310
Helix 10	AB1	A	220	232	Right-handed alpha
Helix 11	AB2	A	245	248	Right-handed 310
Helix 12	AB3	A	270	285	Right-handed alpha
Helix 13	AB4	A	298	309	Right-handed alpha
Helix 14	AB5	A	324	334	Right-handed alpha
Helix 15	AB6	A	343	348	Right-handed alpha
Helix 16	AB7	A	349	363	Right-handed alpha
Helix 17	AB8	A	379	389	Right-handed alpha
Helix 18	AB9	A	400	418	Right-handed alpha
Helix 19	AC1	B	56	60	Right-handed 310
Helix 20	AC2	B	62	72	Right-handed alpha
Helix 21	AC3	B	72	78	Right-handed alpha
Helix 22	AC4	B	84	97	Right-handed alpha
Helix 23	AC5	B	105	125	Right-handed alpha
Helix 24	AC6	B	127	137	Right-handed alpha
Helix 25	AC7	B	154	157	Right-handed 310
Helix 26	AC8	B	175	199	Right-handed alpha
Helix 27	AC9	B	200	204	Right-handed 310
Helix 28	AD1	B	220	233	Right-handed alpha
Helix 29	AD2	B	245	248	Right-handed 310
Helix 30	AD3	B	270	285	Right-handed alpha
Helix 31	AD4	B	298	309	Right-handed alpha
Helix 32	AD5	B	324	335	Right-handed alpha
Helix 33	AD6	B	343	348	Right-handed alpha
Helix 34	AD7	B	349	363	Right-handed alpha
Helix 35	AD8	B	379	389	Right-handed alpha
Helix 36	AD9	B	400	418	Right-handed alpha
Helix 37	AE1	B	425	429	Right-handed 310
Helix 38	AE2	C	56	60	Right-handed 310
Helix 39	AE3	C	62	72	Right-handed alpha
Helix 40	AE4	C	72	78	Right-handed alpha
Helix 41	AE5	C	84	97	Right-handed alpha
Helix 42	AE6	C	105	124	Right-handed alpha
Helix 43	AE7	C	127	137	Right-handed alpha
Helix 44	AE8	C	175	199	Right-handed alpha
Helix 45	AE9	C	200	204	Right-handed 310
Helix 46	AF1	C	220	232	Right-handed alpha
Helix 47	AF2	C	245	248	Right-handed 310
Helix 48	AF3	C	270	285	Right-handed alpha
Helix 49	AF4	C	298	309	Right-handed alpha
Helix 50	AF5	C	324	334	Right-handed alpha
Helix 51	AF6	C	343	348	Right-handed alpha
Helix 52	AF7	C	349	363	Right-handed alpha
Helix 53	AF8	C	379	389	Right-handed alpha
Helix 54	AF9	C	400	418	Right-handed alpha
Helix 55	AG1	C	425	429	Right-handed 310
Helix 56	AG2	D	56	60	Right-handed 310
Helix 57	AG3	D	62	72	Right-handed alpha
Helix 58	AG4	D	72	78	Right-handed alpha
Helix 59	AG5	D	84	97	Right-handed alpha
Helix 60	AG6	D	105	124	Right-handed alpha
Helix 61	AG7	D	127	137	Right-handed alpha
Helix 62	AG8	D	154	157	Right-handed 310
Helix 63	AG9	D	175	199	Right-handed alpha
Helix 64	AH1	D	200	204	Right-handed 310
Helix 65	AH2	D	220	233	Right-handed alpha
Helix 66	AH3	D	245	248	Right-handed 310
Helix 67	AH4	D	270	285	Right-handed alpha
Helix 68	AH5	D	298	309	Right-handed alpha
Helix 69	AH6	D	324	334	Right-handed alpha
Helix 70	AH7	D	343	348	Right-handed alpha
Helix 71	AH8	D	349	363	Right-handed alpha
Helix 72	AH9	D	379	389	Right-handed alpha
Helix 73	AI1	D	400	418	Right-handed alpha
Helix 74	AI2	E	28	34	Right-handed alpha
Helix 75	AI3	E	64	67	Right-handed 310
Helix 76	AI4	E	76	78	Right-handed 310
Helix 77	AI5	E	89	93	Right-handed 310
Helix 78	AI6	E	101	106	Right-handed alpha
Helix 79	AI7	F	28	35	Right-handed alpha
Helix 80	AI8	F	64	67	Right-handed 310
Helix 81	AI9	F	76	78	Right-handed 310
Helix 82	AJ1	F	89	93	Right-handed 310
Helix 83	AJ2	F	101	106	Right-handed alpha
Helix 84	AJ3	G	28	34	Right-handed alpha
Helix 85	AJ4	G	64	67	Right-handed 310
Helix 86	AJ5	G	76	78	Right-handed 310
Helix 87	AJ6	G	89	93	Right-handed 310
Helix 88	AJ7	G	101	106	Right-handed alpha
Helix 89	AJ8	H	28	35	Right-handed alpha
Helix 90	AJ9	H	64	67	Right-handed 310
Helix 91	AK1	H	76	78	Right-handed 310
Helix 92	AK2	H	89	93	Right-handed 310
Helix 93	AK3	H	101	106	Right-handed alpha

There are 21 sheets in PDB entry 9SLQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	12	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	29	34	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	422	423	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	392	394	parallel
Strand 3	A	366	370	parallel
Strand 4	A	339	342	parallel
Strand 5	A	314	317	parallel
Strand 6	A	287	291	parallel
Strand 7	A	239	243	parallel
Strand 8	A	165	169	anti-parallel
Strand 9	A	148	152	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	256	258	anti-parallel
Strand 3	A	268	269	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	12	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	29	34	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	392	394	parallel
Strand 3	B	366	370	parallel
Strand 4	B	339	342	parallel
Strand 5	B	314	317	parallel
Strand 6	B	287	291	parallel
Strand 7	B	239	243	parallel
Strand 8	B	165	169	anti-parallel
Strand 9	B	148	152	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	256	258	anti-parallel
Strand 3	B	268	269	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	12	first strand
Strand 2	C	18	26	anti-parallel
Strand 3	C	29	34	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	392	394	parallel
Strand 3	C	366	370	parallel
Strand 4	C	339	342	parallel
Strand 5	C	314	317	parallel
Strand 6	C	287	291	parallel
Strand 7	C	239	243	parallel
Strand 8	C	165	169	anti-parallel
Strand 9	C	148	152	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	251	first strand
Strand 2	C	256	258	anti-parallel
Strand 3	C	268	269	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	12	first strand
Strand 2	D	18	26	anti-parallel
Strand 3	D	29	34	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	392	394	parallel
Strand 3	D	366	370	parallel
Strand 4	D	339	342	parallel
Strand 5	D	314	317	parallel
Strand 6	D	287	291	parallel
Strand 7	D	239	243	parallel
Strand 8	D	165	169	anti-parallel
Strand 9	D	148	152	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	251	first strand
Strand 2	D	256	258	anti-parallel
Strand 3	D	268	269	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	80	85	anti-parallel
Strand 4	E	70	75	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	113	117	parallel
Strand 3	E	94	100	anti-parallel
Strand 4	E	37	42	anti-parallel
Strand 5	E	48	54	anti-parallel
Strand 6	E	60	62	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	80	85	anti-parallel
Strand 4	F	70	75	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	37	42	anti-parallel
Strand 5	F	48	54	anti-parallel
Strand 6	F	60	62	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	18	23	anti-parallel
Strand 3	G	80	85	anti-parallel
Strand 4	G	70	75	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	113	117	parallel
Strand 3	G	94	100	anti-parallel
Strand 4	G	37	42	anti-parallel
Strand 5	G	48	54	anti-parallel
Strand 6	G	60	62	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	94	100	anti-parallel
Strand 4	H	37	42	anti-parallel
Strand 5	H	48	54	anti-parallel
Strand 6	H	60	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SLQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SLQ