Analysis of interatomic Contacts of Structural Units in PDB entry:
9SLZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SLZ entry

There are 5 chains in PDB entry 9SLZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 484
T
 C 25 U 33
T
 U 35 U 36
T
 A 38 A 38
T
 C 40 U 43
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9SLZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 19Right-handed alpha
Helix 2
AA2
A
32 40Right-handed alpha
Helix 3
AA3
A
93 99Right-handed 310
Helix 4
AA4
A
145 152Right-handed alpha
Helix 5
AA5
A
152 160Right-handed alpha
Helix 6
AA6
A
160 184Right-handed alpha
Helix 7
AA7
A
223 234Right-handed alpha
Helix 8
AA8
A
269 289Right-handed alpha
Helix 9
AA9
A
312 321Right-handed alpha
Helix 10
AB1
A
328 340Right-handed alpha
Helix 11
AB2
A
341 344Right-handed 310
Helix 12
AB3
A
350 360Right-handed alpha
Helix 13
AB4
A
361 364Right-handed 310
Helix 14
AB5
A
412 431Right-handed alpha
Helix 15
AB6
A
438 449Right-handed alpha
Helix 16
AB7
A
459 468Right-handed alpha
Helix 17
AB8
A
471 475Right-handed 310
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There are 5 sheets in PDB entry 9SLZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 66first strand
Strand 2
A
69 75anti-parallel
Strand 3
A
80 86anti-parallel
Strand 4
A
119 130parallel
Strand 5
A
104 113anti-parallel
Strand 6
A
54 66anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
237 245parallel
Strand 3
A
257 266anti-parallel
Strand 4
A
452 458anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
215 219anti-parallel
Strand 3
A
207 210anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
300 302anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 311first strand
Strand 2
A
368 371parallel
Strand 3
A
393 397anti-parallel
Strand 4
A
402 407anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il