Analysis of interatomic Contacts of Structural Units in PDB entry:
9SM2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SM2 entry

There are 8 chains in PDB entry 9SM2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 119	PHE 999
B	CYS 19	TYR 496
C	THR 119	PHE 999
D	CYS 19	TYR 496
E	CYS 21	PRO 154
F	CYS 21	PRO 154
G	PRO 24	GLU 592
H	PRO 24	GLU 592

There are124 helices in PDB entry 9SM2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	134	138	Right-handed alpha
Helix 2	AA2	A	144	149	Right-handed alpha
Helix 3	AA3	A	195	199	Right-handed 310
Helix 4	AA4	A	200	202	Right-handed 310
Helix 5	AA5	A	212	217	Right-handed alpha
Helix 6	AA6	A	218	223	Right-handed 310
Helix 7	AA7	A	261	275	Right-handed alpha
Helix 8	AA8	A	281	285	Right-handed 310
Helix 9	AA9	A	286	291	Right-handed 310
Helix 10	AB1	A	295	301	Right-handed alpha
Helix 11	AB2	A	376	383	Right-handed alpha
Helix 12	AB3	A	402	407	Right-handed alpha
Helix 13	AB4	A	413	419	Right-handed alpha
Helix 14	AB5	A	600	603	Right-handed 310
Helix 15	AB6	A	706	710	Right-handed 310
Helix 16	AB7	A	799	806	Right-handed alpha
Helix 17	AB8	A	829	831	Right-handed 310
Helix 18	AB9	A	874	879	Right-handed alpha
Helix 19	AC1	A	888	894	Right-handed 310
Helix 20	AC2	A	919	921	Right-handed 310
Helix 21	AC3	A	941	946	Right-handed alpha
Helix 22	AC4	B	38	48	Right-handed alpha
Helix 23	AC5	B	49	55	Right-handed 310
Helix 24	AC6	B	65	70	Right-handed alpha
Helix 25	AC7	B	83	91	Right-handed alpha
Helix 26	AC8	B	98	122	Right-handed alpha
Helix 27	AC9	B	128	155	Right-handed alpha
Helix 28	AD1	B	176	195	Right-handed alpha
Helix 29	AD2	B	197	201	Right-handed 310
Helix 30	AD3	B	210	226	Right-handed alpha
Helix 31	AD4	B	227	230	Right-handed 310
Helix 32	AD5	B	231	246	Right-handed alpha
Helix 33	AD6	B	249	253	Right-handed 310
Helix 34	AD7	B	254	259	Right-handed 310
Helix 35	AD8	B	292	298	Right-handed alpha
Helix 36	AD9	B	315	320	Right-handed alpha
Helix 37	AE1	B	327	332	Right-handed alpha
Helix 38	AE2	B	347	351	Right-handed 310
Helix 39	AE3	B	382	396	Right-handed alpha
Helix 40	AE4	B	398	413	Right-handed alpha
Helix 41	AE5	B	423	439	Right-handed alpha
Helix 42	AE6	B	443	452	Right-handed alpha
Helix 43	AE7	B	455	466	Right-handed alpha
Helix 44	AE8	B	471	476	Right-handed 310
Helix 45	AE9	B	480	487	Right-handed alpha
Helix 46	AF1	C	134	138	Right-handed alpha
Helix 47	AF2	C	144	149	Right-handed alpha
Helix 48	AF3	C	195	199	Right-handed 310
Helix 49	AF4	C	200	202	Right-handed 310
Helix 50	AF5	C	212	217	Right-handed alpha
Helix 51	AF6	C	218	223	Right-handed 310
Helix 52	AF7	C	261	275	Right-handed alpha
Helix 53	AF8	C	281	285	Right-handed 310
Helix 54	AF9	C	286	291	Right-handed 310
Helix 55	AG1	C	295	301	Right-handed alpha
Helix 56	AG2	C	376	383	Right-handed alpha
Helix 57	AG3	C	402	407	Right-handed alpha
Helix 58	AG4	C	413	419	Right-handed alpha
Helix 59	AG5	C	534	538	Right-handed 310
Helix 60	AG6	C	601	603	Right-handed 310
Helix 61	AG7	C	706	710	Right-handed 310
Helix 62	AG8	C	799	806	Right-handed alpha
Helix 63	AG9	C	829	833	Right-handed 310
Helix 64	AH1	C	873	879	Right-handed alpha
Helix 65	AH2	C	888	894	Right-handed 310
Helix 66	AH3	C	919	921	Right-handed 310
Helix 67	AH4	C	941	946	Right-handed alpha
Helix 68	AH5	D	38	48	Right-handed alpha
Helix 69	AH6	D	49	55	Right-handed 310
Helix 70	AH7	D	65	70	Right-handed alpha
Helix 71	AH8	D	83	91	Right-handed alpha
Helix 72	AH9	D	98	122	Right-handed alpha
Helix 73	AI1	D	128	155	Right-handed alpha
Helix 74	AI2	D	176	195	Right-handed alpha
Helix 75	AI3	D	197	201	Right-handed 310
Helix 76	AI4	D	210	226	Right-handed alpha
Helix 77	AI5	D	227	230	Right-handed 310
Helix 78	AI6	D	231	245	Right-handed alpha
Helix 79	AI7	D	249	253	Right-handed 310
Helix 80	AI8	D	255	259	Right-handed 310
Helix 81	AI9	D	292	298	Right-handed alpha
Helix 82	AJ1	D	315	320	Right-handed alpha
Helix 83	AJ2	D	327	332	Right-handed alpha
Helix 84	AJ3	D	347	351	Right-handed 310
Helix 85	AJ4	D	382	396	Right-handed alpha
Helix 86	AJ5	D	398	413	Right-handed alpha
Helix 87	AJ6	D	423	439	Right-handed alpha
Helix 88	AJ7	D	443	452	Right-handed alpha
Helix 89	AJ8	D	455	466	Right-handed alpha
Helix 90	AJ9	D	472	476	Right-handed 310
Helix 91	AK1	D	480	487	Right-handed alpha
Helix 92	AK2	E	47	51	Right-handed 310
Helix 93	AK3	E	104	116	Right-handed alpha
Helix 94	AK4	F	47	51	Right-handed 310
Helix 95	AK5	F	104	114	Right-handed alpha
Helix 96	AK6	G	148	162	Right-handed alpha
Helix 97	AK7	G	201	214	Right-handed alpha
Helix 98	AK8	G	228	233	Right-handed 310
Helix 99	AK9	G	237	241	Right-handed 310
Helix 100	AL1	G	271	289	Right-handed alpha
Helix 101	AL2	G	314	330	Right-handed alpha
Helix 102	AL3	G	339	343	Right-handed 310
Helix 103	AL4	G	344	352	Right-handed alpha
Helix 104	AL5	G	362	366	Right-handed 310
Helix 105	AL6	G	367	382	Right-handed alpha
Helix 106	AL7	G	397	401	Right-handed 310
Helix 107	AL8	G	406	420	Right-handed alpha
Helix 108	AL9	G	446	463	Right-handed alpha
Helix 109	AM1	G	463	468	Right-handed alpha
Helix 110	AM2	G	559	563	Right-handed 310
Helix 111	AM3	H	148	162	Right-handed alpha
Helix 112	AM4	H	201	215	Right-handed alpha
Helix 113	AM5	H	230	234	Right-handed 310
Helix 114	AM6	H	237	241	Right-handed 310
Helix 115	AM7	H	271	289	Right-handed alpha
Helix 116	AM8	H	314	330	Right-handed alpha
Helix 117	AM9	H	344	350	Right-handed alpha
Helix 118	AN1	H	362	366	Right-handed 310
Helix 119	AN2	H	367	382	Right-handed alpha
Helix 120	AN3	H	397	401	Right-handed 310
Helix 121	AN4	H	406	420	Right-handed alpha
Helix 122	AN5	H	446	463	Right-handed alpha
Helix 123	AN6	H	463	468	Right-handed alpha
Helix 124	AN7	H	559	563	Right-handed 310

There are 45 sheets in PDB entry 9SM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	133	first strand
Strand 2	A	204	210	anti-parallel
Strand 3	A	227	232	anti-parallel
Strand 4	A	184	187	parallel
Strand 5	A	190	192	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	169	172	anti-parallel

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There are 23 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	253	first strand
Strand 2	A	304	316	anti-parallel
Strand 3	A	320	332	anti-parallel
Strand 4	A	339	354	anti-parallel
Strand 5	A	357	372	anti-parallel
Strand 6	A	421	437	anti-parallel
Strand 7	A	442	461	anti-parallel
Strand 8	A	474	498	anti-parallel
Strand 9	A	502	526	anti-parallel
Strand 10	A	541	564	anti-parallel
Strand 11	A	568	579	anti-parallel
Strand 12	A	588	598	anti-parallel
Strand 13	A	613	627	anti-parallel
Strand 14	A	667	680	anti-parallel
Strand 15	A	685	701	anti-parallel
Strand 16	A	719	738	anti-parallel
Strand 17	A	742	759	anti-parallel
Strand 18	A	843	853	anti-parallel
Strand 19	A	856	866	anti-parallel
Strand 20	A	928	939	anti-parallel
Strand 21	A	952	966	anti-parallel
Strand 22	A	988	999	anti-parallel
Strand 23	A	238	253	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	644	first strand
Strand 2	A	650	651	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	771	first strand
Strand 2	A	774	779	anti-parallel
Strand 3	A	787	791	anti-parallel
Strand 4	A	833	837	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	793	796	first strand
Strand 2	A	817	819	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	923	925	first strand
Strand 2	A	869	872	anti-parallel
Strand 3	A	980	981	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	76	first strand
Strand 2	B	311	314	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	273	first strand
Strand 2	B	377	381	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	356	357	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	133	first strand
Strand 2	C	204	210	anti-parallel
Strand 3	C	227	232	anti-parallel
Strand 4	C	184	187	parallel
Strand 5	C	190	192	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	159	first strand
Strand 2	C	169	172	anti-parallel

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There are 23 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	253	first strand
Strand 2	C	304	316	anti-parallel
Strand 3	C	320	332	anti-parallel
Strand 4	C	338	352	anti-parallel
Strand 5	C	357	373	anti-parallel
Strand 6	C	420	437	anti-parallel
Strand 7	C	442	461	anti-parallel
Strand 8	C	475	498	anti-parallel
Strand 9	C	502	525	anti-parallel
Strand 10	C	541	564	anti-parallel
Strand 11	C	568	579	anti-parallel
Strand 12	C	588	599	anti-parallel
Strand 13	C	613	627	anti-parallel
Strand 14	C	667	680	anti-parallel
Strand 15	C	685	697	anti-parallel
Strand 16	C	722	738	anti-parallel
Strand 17	C	742	760	anti-parallel
Strand 18	C	843	853	anti-parallel
Strand 19	C	856	866	anti-parallel
Strand 20	C	928	939	anti-parallel
Strand 21	C	952	966	anti-parallel
Strand 22	C	988	999	anti-parallel
Strand 23	C	238	253	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	643	644	first strand
Strand 2	C	650	651	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	702	first strand
Strand 2	C	718	720	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	766	771	first strand
Strand 2	C	774	779	anti-parallel
Strand 3	C	787	790	anti-parallel
Strand 4	C	834	837	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	793	796	first strand
Strand 2	C	817	819	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	869	871	first strand
Strand 2	C	923	925	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	76	first strand
Strand 2	D	311	314	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	273	first strand
Strand 2	D	377	381	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	334	first strand
Strand 2	D	356	357	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	39	first strand
Strand 2	E	54	60	anti-parallel
Strand 3	E	99	103	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	141	150	parallel
Strand 3	E	122	133	anti-parallel
Strand 4	E	72	80	anti-parallel
Strand 5	E	89	95	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	39	first strand
Strand 2	F	54	60	anti-parallel
Strand 3	F	99	103	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	44	first strand
Strand 2	F	141	150	parallel
Strand 3	F	122	133	anti-parallel
Strand 4	F	72	80	anti-parallel
Strand 5	F	89	94	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	116	127	parallel
Strand 3	G	103	113	anti-parallel
Strand 4	G	73	78	anti-parallel
Strand 5	G	81	87	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	49	first strand
Strand 2	G	59	64	anti-parallel
Strand 3	G	92	96	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	140	first strand
Strand 2	G	166	169	parallel
Strand 3	G	217	223	parallel
Strand 4	G	293	297	parallel
Strand 5	G	334	337	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	190	192	first strand
Strand 2	G	198	200	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	227	first strand
Strand 2	G	264	266	anti-parallel
Strand 3	G	253	254	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	305	306	first strand
Strand 2	G	312	313	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	357	360	first strand
Strand 2	G	388	391	parallel
Strand 3	G	424	425	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	403	404	first strand
Strand 2	G	443	444	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	472	474	first strand
Strand 2	G	496	504	anti-parallel
Strand 3	G	487	489	parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	472	474	first strand
Strand 2	G	496	504	anti-parallel
Strand 3	G	507	515	anti-parallel
Strand 4	G	586	592	anti-parallel
Strand 5	G	551	555	anti-parallel
Strand 6	G	565	567	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	478	480	first strand
Strand 2	G	536	543	anti-parallel
Strand 3	G	575	583	anti-parallel
Strand 4	G	570	572	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	41	first strand
Strand 2	H	116	127	parallel
Strand 3	H	103	113	anti-parallel
Strand 4	H	73	78	anti-parallel
Strand 5	H	81	87	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	49	first strand
Strand 2	H	59	64	anti-parallel
Strand 3	H	92	96	anti-parallel

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There are 8 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	140	first strand
Strand 2	H	166	169	parallel
Strand 3	H	217	223	parallel
Strand 4	H	293	297	parallel
Strand 5	H	334	340	parallel
Strand 6	H	357	360	parallel
Strand 7	H	388	391	parallel
Strand 8	H	424	425	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	190	192	first strand
Strand 2	H	198	200	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	226	228	first strand
Strand 2	H	264	266	anti-parallel
Strand 3	H	253	254	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	403	404	first strand
Strand 2	H	443	444	parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	472	474	first strand
Strand 2	H	496	503	anti-parallel
Strand 3	H	487	489	parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	472	474	first strand
Strand 2	H	496	503	anti-parallel
Strand 3	H	508	515	anti-parallel
Strand 4	H	586	592	anti-parallel
Strand 5	H	551	555	anti-parallel
Strand 6	H	565	566	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	478	480	first strand
Strand 2	H	536	544	anti-parallel
Strand 3	H	575	583	anti-parallel
Strand 4	H	570	572	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SM2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SM2