Analysis of interatomic Contacts of Structural Units in PDB entry:
9SMK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SMK entry

There are 4 chains in PDB entry 9SMK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 81	LEU 1175
B	THR 81	LEU 1175
C	THR 81	LEU 1175
D	THR 81	LEU 1175

There are176 helices in PDB entry 9SMK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	108	Right-handed alpha
Helix 2	AA2	A	131	141	Right-handed alpha
Helix 3	AA3	A	142	150	Right-handed alpha
Helix 4	AA4	A	161	177	Right-handed alpha
Helix 5	AA5	A	202	206	Right-handed 310
Helix 6	AA6	A	244	260	Right-handed alpha
Helix 7	AA7	A	281	294	Right-handed alpha
Helix 8	AA8	A	305	316	Right-handed alpha
Helix 9	AA9	A	330	339	Right-handed alpha
Helix 10	AB1	A	343	356	Right-handed alpha
Helix 11	AB2	A	372	386	Right-handed alpha
Helix 12	AB3	A	397	404	Right-handed alpha
Helix 13	AB4	A	405	415	Right-handed alpha
Helix 14	AB5	A	421	435	Right-handed alpha
Helix 15	AB6	A	437	448	Right-handed alpha
Helix 16	AB7	A	456	465	Right-handed alpha
Helix 17	AB8	A	471	481	Right-handed alpha
Helix 18	AB9	A	504	510	Right-handed alpha
Helix 19	AC1	A	559	569	Right-handed alpha
Helix 20	AC2	A	571	580	Right-handed alpha
Helix 21	AC3	A	584	602	Right-handed alpha
Helix 22	AC4	A	606	634	Right-handed alpha
Helix 23	AC5	A	634	643	Right-handed alpha
Helix 24	AC6	A	647	652	Right-handed alpha
Helix 25	AC7	A	653	662	Right-handed alpha
Helix 26	AC8	A	663	669	Right-handed alpha
Helix 27	AC9	A	669	681	Right-handed alpha
Helix 28	AD1	A	689	699	Right-handed alpha
Helix 29	AD2	A	700	705	Right-handed 310
Helix 30	AD3	A	768	778	Right-handed alpha
Helix 31	AD4	A	778	804	Right-handed alpha
Helix 32	AD5	A	811	833	Right-handed alpha
Helix 33	AD6	A	851	860	Right-handed alpha
Helix 34	AD7	A	862	884	Right-handed alpha
Helix 35	AD8	A	887	910	Right-handed alpha
Helix 36	AD9	A	916	923	Right-handed alpha
Helix 37	AE1	A	926	952	Right-handed alpha
Helix 38	AE2	A	958	974	Right-handed alpha
Helix 39	AE3	A	979	984	Right-handed alpha
Helix 40	AE4	A	1016	1031	Right-handed alpha
Helix 41	AE5	A	1033	1072	Right-handed alpha
Helix 42	AE6	A	1079	1094	Right-handed alpha
Helix 43	AE7	A	1114	1143	Right-handed alpha
Helix 44	AE8	A	1143	1175	Right-handed alpha
Helix 45	AE9	B	98	108	Right-handed alpha
Helix 46	AF1	B	131	141	Right-handed alpha
Helix 47	AF2	B	142	150	Right-handed alpha
Helix 48	AF3	B	161	177	Right-handed alpha
Helix 49	AF4	B	202	206	Right-handed 310
Helix 50	AF5	B	244	260	Right-handed alpha
Helix 51	AF6	B	281	294	Right-handed alpha
Helix 52	AF7	B	305	316	Right-handed alpha
Helix 53	AF8	B	330	339	Right-handed alpha
Helix 54	AF9	B	343	356	Right-handed alpha
Helix 55	AG1	B	372	386	Right-handed alpha
Helix 56	AG2	B	397	404	Right-handed alpha
Helix 57	AG3	B	405	415	Right-handed alpha
Helix 58	AG4	B	421	435	Right-handed alpha
Helix 59	AG5	B	437	448	Right-handed alpha
Helix 60	AG6	B	456	466	Right-handed alpha
Helix 61	AG7	B	471	481	Right-handed alpha
Helix 62	AG8	B	504	510	Right-handed alpha
Helix 63	AG9	B	559	569	Right-handed alpha
Helix 64	AH1	B	571	580	Right-handed alpha
Helix 65	AH2	B	584	602	Right-handed alpha
Helix 66	AH3	B	606	634	Right-handed alpha
Helix 67	AH4	B	634	643	Right-handed alpha
Helix 68	AH5	B	647	652	Right-handed alpha
Helix 69	AH6	B	653	662	Right-handed alpha
Helix 70	AH7	B	663	669	Right-handed alpha
Helix 71	AH8	B	669	681	Right-handed alpha
Helix 72	AH9	B	689	699	Right-handed alpha
Helix 73	AI1	B	700	705	Right-handed 310
Helix 74	AI2	B	768	778	Right-handed alpha
Helix 75	AI3	B	778	804	Right-handed alpha
Helix 76	AI4	B	811	833	Right-handed alpha
Helix 77	AI5	B	851	860	Right-handed alpha
Helix 78	AI6	B	862	884	Right-handed alpha
Helix 79	AI7	B	887	910	Right-handed alpha
Helix 80	AI8	B	916	923	Right-handed alpha
Helix 81	AI9	B	926	952	Right-handed alpha
Helix 82	AJ1	B	958	974	Right-handed alpha
Helix 83	AJ2	B	979	984	Right-handed alpha
Helix 84	AJ3	B	1016	1031	Right-handed alpha
Helix 85	AJ4	B	1033	1072	Right-handed alpha
Helix 86	AJ5	B	1079	1094	Right-handed alpha
Helix 87	AJ6	B	1114	1143	Right-handed alpha
Helix 88	AJ7	B	1143	1175	Right-handed alpha
Helix 89	AJ8	C	98	108	Right-handed alpha
Helix 90	AJ9	C	131	141	Right-handed alpha
Helix 91	AK1	C	142	150	Right-handed alpha
Helix 92	AK2	C	161	177	Right-handed alpha
Helix 93	AK3	C	202	206	Right-handed 310
Helix 94	AK4	C	244	260	Right-handed alpha
Helix 95	AK5	C	281	294	Right-handed alpha
Helix 96	AK6	C	305	316	Right-handed alpha
Helix 97	AK7	C	330	339	Right-handed alpha
Helix 98	AK8	C	343	356	Right-handed alpha
Helix 99	AK9	C	372	386	Right-handed alpha
Helix 100	AL1	C	397	404	Right-handed alpha
Helix 101	AL2	C	405	415	Right-handed alpha
Helix 102	AL3	C	421	435	Right-handed alpha
Helix 103	AL4	C	437	448	Right-handed alpha
Helix 104	AL5	C	456	465	Right-handed alpha
Helix 105	AL6	C	471	481	Right-handed alpha
Helix 106	AL7	C	504	510	Right-handed alpha
Helix 107	AL8	C	559	569	Right-handed alpha
Helix 108	AL9	C	571	580	Right-handed alpha
Helix 109	AM1	C	584	602	Right-handed alpha
Helix 110	AM2	C	606	634	Right-handed alpha
Helix 111	AM3	C	634	643	Right-handed alpha
Helix 112	AM4	C	647	652	Right-handed alpha
Helix 113	AM5	C	653	662	Right-handed alpha
Helix 114	AM6	C	663	669	Right-handed alpha
Helix 115	AM7	C	669	681	Right-handed alpha
Helix 116	AM8	C	689	699	Right-handed alpha
Helix 117	AM9	C	700	705	Right-handed 310
Helix 118	AN1	C	768	778	Right-handed alpha
Helix 119	AN2	C	778	804	Right-handed alpha
Helix 120	AN3	C	811	833	Right-handed alpha
Helix 121	AN4	C	851	860	Right-handed alpha
Helix 122	AN5	C	862	884	Right-handed alpha
Helix 123	AN6	C	887	910	Right-handed alpha
Helix 124	AN7	C	916	923	Right-handed alpha
Helix 125	AN8	C	926	952	Right-handed alpha
Helix 126	AN9	C	958	974	Right-handed alpha
Helix 127	AO1	C	979	984	Right-handed alpha
Helix 128	AO2	C	1016	1031	Right-handed alpha
Helix 129	AO3	C	1033	1072	Right-handed alpha
Helix 130	AO4	C	1079	1094	Right-handed alpha
Helix 131	AO5	C	1114	1143	Right-handed alpha
Helix 132	AO6	C	1143	1175	Right-handed alpha
Helix 133	AO7	D	98	108	Right-handed alpha
Helix 134	AO8	D	131	141	Right-handed alpha
Helix 135	AO9	D	142	150	Right-handed alpha
Helix 136	AP1	D	161	177	Right-handed alpha
Helix 137	AP2	D	202	206	Right-handed 310
Helix 138	AP3	D	244	260	Right-handed alpha
Helix 139	AP4	D	281	294	Right-handed alpha
Helix 140	AP5	D	305	316	Right-handed alpha
Helix 141	AP6	D	330	339	Right-handed alpha
Helix 142	AP7	D	343	356	Right-handed alpha
Helix 143	AP8	D	372	386	Right-handed alpha
Helix 144	AP9	D	397	404	Right-handed alpha
Helix 145	AQ1	D	405	415	Right-handed alpha
Helix 146	AQ2	D	421	435	Right-handed alpha
Helix 147	AQ3	D	437	448	Right-handed alpha
Helix 148	AQ4	D	456	465	Right-handed alpha
Helix 149	AQ5	D	471	481	Right-handed alpha
Helix 150	AQ6	D	504	510	Right-handed alpha
Helix 151	AQ7	D	559	569	Right-handed alpha
Helix 152	AQ8	D	571	580	Right-handed alpha
Helix 153	AQ9	D	584	602	Right-handed alpha
Helix 154	AR1	D	606	634	Right-handed alpha
Helix 155	AR2	D	634	643	Right-handed alpha
Helix 156	AR3	D	647	652	Right-handed alpha
Helix 157	AR4	D	653	662	Right-handed alpha
Helix 158	AR5	D	663	669	Right-handed alpha
Helix 159	AR6	D	669	681	Right-handed alpha
Helix 160	AR7	D	689	699	Right-handed alpha
Helix 161	AR8	D	700	705	Right-handed 310
Helix 162	AR9	D	768	778	Right-handed alpha
Helix 163	AS1	D	778	804	Right-handed alpha
Helix 164	AS2	D	811	833	Right-handed alpha
Helix 165	AS3	D	851	860	Right-handed alpha
Helix 166	AS4	D	862	884	Right-handed alpha
Helix 167	AS5	D	887	910	Right-handed alpha
Helix 168	AS6	D	916	923	Right-handed alpha
Helix 169	AS7	D	926	952	Right-handed alpha
Helix 170	AS8	D	958	974	Right-handed alpha
Helix 171	AS9	D	979	984	Right-handed alpha
Helix 172	AT1	D	1016	1031	Right-handed alpha
Helix 173	AT2	D	1033	1072	Right-handed alpha
Helix 174	AT3	D	1079	1094	Right-handed alpha
Helix 175	AT4	D	1114	1143	Right-handed alpha
Helix 176	AT5	D	1143	1175	Right-handed alpha

There are 8 sheets in PDB entry 9SMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	94	first strand
Strand 2	A	231	236	parallel
Strand 3	A	189	190	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	153	154	parallel
Strand 3	A	118	122	parallel
Strand 4	A	273	277	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	94	first strand
Strand 2	B	231	236	parallel
Strand 3	B	189	190	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	153	154	parallel
Strand 3	B	118	122	parallel
Strand 4	B	273	277	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	94	first strand
Strand 2	C	231	236	parallel
Strand 3	C	189	190	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	153	154	parallel
Strand 3	C	118	122	parallel
Strand 4	C	273	277	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	94	first strand
Strand 2	D	231	236	parallel
Strand 3	D	189	190	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	153	154	parallel
Strand 3	D	118	122	parallel
Strand 4	D	273	277	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SMK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SMK