Analysis of interatomic Contacts of Structural Units in PDB entry:
9SMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SMV entry

There are 3 chains in PDB entry 9SMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP -2	HIS 223
A	SER -1	HIS 223
B	ASP -2	HIS 223

There are 33 helices in PDB entry 9SMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	11	15	Right-handed 310
Helix 2	AA2	C	16	20	Right-handed 310
Helix 3	AA3	C	22	25	Right-handed 310
Helix 4	AA4	C	33	43	Right-handed alpha
Helix 5	AA5	C	56	65	Right-handed alpha
Helix 6	AA6	C	67	71	Right-handed 310
Helix 7	AA7	C	83	97	Right-handed alpha
Helix 8	AA8	C	113	117	Right-handed 310
Helix 9	AA9	C	169	173	Right-handed 310
Helix 10	AB1	C	182	192	Right-handed alpha
Helix 11	AB2	C	209	222	Right-handed alpha
Helix 12	AB3	A	11	15	Right-handed 310
Helix 13	AB4	A	16	20	Right-handed 310
Helix 14	AB5	A	22	25	Right-handed 310
Helix 15	AB6	A	33	44	Right-handed alpha
Helix 16	AB7	A	56	65	Right-handed alpha
Helix 17	AB8	A	67	71	Right-handed 310
Helix 18	AB9	A	83	97	Right-handed alpha
Helix 19	AC1	A	113	117	Right-handed 310
Helix 20	AC2	A	169	173	Right-handed 310
Helix 21	AC3	A	182	192	Right-handed alpha
Helix 22	AC4	A	209	222	Right-handed alpha
Helix 23	AC5	B	11	15	Right-handed 310
Helix 24	AC6	B	16	20	Right-handed 310
Helix 25	AC7	B	22	25	Right-handed 310
Helix 26	AC8	B	33	43	Right-handed alpha
Helix 27	AC9	B	56	65	Right-handed alpha
Helix 28	AD1	B	67	71	Right-handed 310
Helix 29	AD2	B	83	97	Right-handed alpha
Helix 30	AD3	B	113	117	Right-handed 310
Helix 31	AD4	B	169	173	Right-handed 310
Helix 32	AD5	B	182	192	Right-handed alpha
Helix 33	AD6	B	209	222	Right-handed alpha

There are 12 sheets in PDB entry 9SMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	78	first strand
Strand 2	C	48	53	parallel
Strand 3	C	2	6	parallel
Strand 4	C	101	105	parallel
Strand 5	C	160	167	anti-parallel
Strand 6	C	125	130	anti-parallel
Strand 7	C	195	199	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	31	32	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	110	first strand
Strand 2	C	204	206	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	149	151	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	78	first strand
Strand 2	A	48	53	parallel
Strand 3	A	2	6	parallel
Strand 4	A	101	105	parallel
Strand 5	A	158	167	anti-parallel
Strand 6	A	141	143	anti-parallel
Strand 7	A	149	151	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	78	first strand
Strand 2	A	48	53	parallel
Strand 3	A	2	6	parallel
Strand 4	A	101	105	parallel
Strand 5	A	158	167	anti-parallel
Strand 6	A	125	130	anti-parallel
Strand 7	A	195	199	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	31	32	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	204	206	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	78	first strand
Strand 2	B	48	53	parallel
Strand 3	B	3	6	parallel
Strand 4	B	101	105	parallel
Strand 5	B	158	167	anti-parallel
Strand 6	B	141	143	anti-parallel
Strand 7	B	149	150	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	78	first strand
Strand 2	B	48	53	parallel
Strand 3	B	3	6	parallel
Strand 4	B	101	105	parallel
Strand 5	B	158	167	anti-parallel
Strand 6	B	125	130	anti-parallel
Strand 7	B	195	199	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	31	32	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	204	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SMV