Analysis of interatomic Contacts of Structural Units in PDB entry:
9SOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SOC entry

There are 4 chains in PDB entry 9SOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26HIS 625
B
 LYS 6LYS 228
C
 GLY 26HIS 625
D
 LYS 6PRO 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 9SOC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 43Right-handed alpha
Helix 2
AA2
A
225 243Right-handed alpha
Helix 3
AA3
A
252 269Right-handed alpha
Helix 4
AA4
A
270 281Right-handed alpha
Helix 5
AA5
A
288 305Right-handed alpha
Helix 6
AA6
A
306 317Right-handed alpha
Helix 7
AA7
A
320 325Right-handed 310
Helix 8
AA8
A
327 343Right-handed alpha
Helix 9
AA9
A
510 534Right-handed alpha
Helix 10
AB1
A
537 554Right-handed alpha
Helix 11
AB2
A
559 564Right-handed 310
Helix 12
AB3
A
566 568Right-handed 310
Helix 13
AB4
A
569 586Right-handed alpha
Helix 14
AB5
A
591 610Right-handed alpha
Helix 15
AB6
A
613 618Right-handed alpha
Helix 16
AB7
A
619 625Right-handed alpha
Helix 17
AB8
B
11 22Right-handed alpha
Helix 18
AB9
B
25 41Right-handed alpha
Helix 19
AC1
B
42 53Right-handed alpha
Helix 20
AC2
B
62 77Right-handed alpha
Helix 21
AC3
B
78 90Right-handed alpha
Helix 22
AC4
B
92 97Right-handed alpha
Helix 23
AC5
B
97 115Right-handed alpha
Helix 24
AC6
B
117 128Right-handed alpha
Helix 25
AC7
B
128 136Right-handed alpha
Helix 26
AC8
B
139 152Right-handed alpha
Helix 27
AC9
B
160 165Right-handed alpha
Helix 28
AD1
B
165 184Right-handed alpha
Helix 29
AD2
B
190 208Right-handed alpha
Helix 30
AD3
C
29 43Right-handed alpha
Helix 31
AD4
C
225 243Right-handed alpha
Helix 32
AD5
C
252 269Right-handed alpha
Helix 33
AD6
C
270 281Right-handed alpha
Helix 34
AD7
C
288 305Right-handed alpha
Helix 35
AD8
C
306 317Right-handed alpha
Helix 36
AD9
C
326 343Right-handed alpha
Helix 37
AE1
C
345 349Right-handed 310
Helix 38
AE2
C
510 535Right-handed alpha
Helix 39
AE3
C
537 554Right-handed alpha
Helix 40
AE4
C
561 566Right-handed alpha
Helix 41
AE5
C
569 585Right-handed alpha
Helix 42
AE6
C
591 610Right-handed alpha
Helix 43
AE7
C
619 625Right-handed alpha
Helix 44
AE8
D
11 22Right-handed alpha
Helix 45
AE9
D
25 41Right-handed alpha
Helix 46
AF1
D
42 53Right-handed alpha
Helix 47
AF2
D
62 77Right-handed alpha
Helix 48
AF3
D
78 90Right-handed alpha
Helix 49
AF4
D
92 97Right-handed alpha
Helix 50
AF5
D
97 115Right-handed alpha
Helix 51
AF6
D
117 128Right-handed alpha
Helix 52
AF7
D
128 136Right-handed alpha
Helix 53
AF8
D
139 152Right-handed alpha
Helix 54
AF9
D
160 164Right-handed 310
Helix 55
AG1
D
165 184Right-handed alpha
Helix 56
AG2
D
190 208Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9SOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
74 76anti-parallel
Strand 3
A
211 216anti-parallel
Strand 4
A
102 112anti-parallel
Strand 5
A
168 174anti-parallel
Strand 6
A
179 184anti-parallel
Strand 7
A
187 193anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
201 206anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
139 143anti-parallel
Strand 5
A
148 151anti-parallel
Strand 6
A
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 69first strand
Strand 2
C
74 77anti-parallel
Strand 3
C
211 216anti-parallel
Strand 4
C
102 112anti-parallel
Strand 5
C
168 174anti-parallel
Strand 6
C
179 184anti-parallel
Strand 7
C
187 188anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 91first strand
Strand 2
C
201 206anti-parallel
Strand 3
C
118 123anti-parallel
Strand 4
C
139 143anti-parallel
Strand 5
C
148 151anti-parallel
Strand 6
C
157 158anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il