Analysis of interatomic Contacts of Structural Units in PDB entry:
9SOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SOJ entry

There are 4 chains in PDB entry 9SOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -5	LEU 126
B	GLY -5	LEU 126
C	ASP -3	LEU 126
D	GLY -5	LEU 126

There are 12 helices in PDB entry 9SOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	39	Right-handed alpha
Helix 2	AA2	A	79	83	Right-handed 310
Helix 3	AA3	A	116	125	Right-handed alpha
Helix 4	AA4	B	29	39	Right-handed alpha
Helix 5	AA5	B	79	83	Right-handed 310
Helix 6	AA6	B	116	125	Right-handed alpha
Helix 7	AA7	C	29	39	Right-handed alpha
Helix 8	AA8	C	79	83	Right-handed 310
Helix 9	AA9	C	116	125	Right-handed alpha
Helix 10	AB1	D	29	39	Right-handed alpha
Helix 11	AB2	D	79	83	Right-handed 310
Helix 12	AB3	D	116	125	Right-handed alpha

There are 14 sheets in PDB entry 9SOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-4	-3	first strand
Strand 2	A	67	69	parallel
Strand 3	A	102	104	parallel
Strand 4	A	48	50	parallel
Strand 5	A	21	23	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	53	55	parallel
Strand 3	A	107	109	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	96	99	parallel
Strand 3	A	59	62	parallel
Strand 4	A	112	114	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	B	85	87	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	48	50	parallel
Strand 3	B	102	104	parallel
Strand 4	B	67	69	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	53	55	parallel
Strand 3	B	107	109	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	96	99	parallel
Strand 3	B	59	62	parallel
Strand 4	B	112	114	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	48	50	parallel
Strand 3	C	102	104	parallel
Strand 4	C	67	69	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	53	62	parallel
Strand 3	C	96	99	parallel
Strand 4	C	44	45	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	53	62	parallel
Strand 3	C	107	114	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	87	first strand
Strand 2	D	85	87	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	23	first strand
Strand 2	D	48	50	parallel
Strand 3	D	102	104	parallel
Strand 4	D	67	69	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	28	first strand
Strand 2	D	53	55	parallel
Strand 3	D	107	109	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	96	99	parallel
Strand 3	D	59	62	parallel
Strand 4	D	112	114	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SOJ