Analysis of interatomic Contacts of Structural Units in PDB entry:
9SP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SP7 entry

There is 1 chain in PDB entry 9SP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 53PRO 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9SP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 79Right-handed alpha
Helix 2
AA2
A
102 117Right-handed alpha
Helix 3
AA3
A
132 146Right-handed alpha
Helix 4
AA4
A
162 173Right-handed alpha
Helix 5
AA5
A
174 179Right-handed alpha
Helix 6
AA6
A
196 201Right-handed 310
Helix 7
AA7
A
222 232Right-handed alpha
Helix 8
AA8
A
233 235Right-handed 310
Helix 9
AA9
A
240 249Right-handed alpha
Helix 10
AB1
A
282 297Right-handed alpha
Helix 11
AB2
A
317 321Right-handed 310
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There are 5 sheets in PDB entry 9SP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
147 148parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
90 97parallel
Strand 3
A
59 64parallel
Strand 4
A
151 156parallel
Strand 5
A
217 221anti-parallel
Strand 6
A
181 184anti-parallel
Strand 7
A
255 258parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
277 278anti-parallel
Strand 3
A
262 263parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
212 213anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
304 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il