Analysis of interatomic Contacts of Structural Units in PDB entry:
9SP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SP8 entry

There are 2 chains in PDB entry 9SP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 1SER 114
A
 PRO 21ALA 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9SP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
28 32Right-handed 310
Helix 2
AA2
B
62 65Right-handed 310
Helix 3
AA3
B
87 91Right-handed 310
Helix 4
AA4
A
29 42Right-handed alpha
Helix 5
AA5
A
45 50Right-handed alpha
Helix 6
AA6
A
52 57Right-handed alpha
Helix 7
AA7
A
58 87Right-handed alpha
Helix 8
AA8
A
92 102Right-handed alpha
Helix 9
AA9
A
104 132Right-handed alpha
Helix 10
AB1
A
133 137Right-handed 310
Helix 11
AB2
A
163 174Right-handed alpha
Helix 12
AB3
A
176 210Right-handed alpha
Helix 13
AB4
A
211 215Right-handed 310
Helix 14
AB5
A
224 236Right-handed alpha
Helix 15
AB6
A
237 239Right-handed 310
Helix 16
AB7
A
242 247Right-handed alpha
Helix 17
AB8
A
248 252Right-handed 310
Helix 18
AB9
A
254 281Right-handed alpha
Helix 19
AC1
A
284 291Right-handed alpha
Helix 20
AC2
A
294 301Right-handed alpha
Helix 21
AC3
A
303 328Right-handed alpha
Helix 22
AC4
A
330 341Right-handed alpha
Helix 23
AC5
A
345 349Right-handed 310
Helix 24
AC6
A
358 376Right-handed alpha
Helix 25
AC7
A
377 382Right-handed alpha
Helix 26
AC8
A
386 406Right-handed alpha
Helix 27
AC9
A
459 484Right-handed alpha
Helix 28
AD1
A
488 513Right-handed alpha
Helix 29
AD2
A
518 522Right-handed 310
Helix 30
AD3
A
535 551Right-handed alpha
Helix 31
AD4
A
552 573Right-handed alpha
Helix 32
AD5
A
578 582Right-handed 310
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There are 3 sheets in PDB entry 9SP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
109 114parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
109 114parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
104 105anti-parallel
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