Analysis of interatomic Contacts of Structural Units in PDB entry:
9SRW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SRW entry

There are 6 chains in PDB entry 9SRW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	ALA 16	HIS 251
A	GLY 8	GLN 405
B	PRO 7	GLN 405
F	ALA 16	HIS 251
C	GLY 8	GLN 405
D	PRO 7	GLN 405

There are102 helices in PDB entry 9SRW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	18	23	Right-handed alpha
Helix 2	AA2	E	25	29	Right-handed 310
Helix 3	AA3	E	32	50	Right-handed alpha
Helix 4	AA4	E	62	74	Right-handed alpha
Helix 5	AA5	E	75	80	Right-handed alpha
Helix 6	AA6	E	81	85	Right-handed 310
Helix 7	AA7	E	131	138	Right-handed alpha
Helix 8	AA8	E	144	155	Right-handed alpha
Helix 9	AA9	E	172	195	Right-handed alpha
Helix 10	AB1	E	196	199	Right-handed 310
Helix 11	AB2	E	202	207	Right-handed 310
Helix 12	AB3	E	208	223	Right-handed alpha
Helix 13	AB4	E	224	227	Right-handed 310
Helix 14	AB5	E	231	243	Right-handed alpha
Helix 15	AB6	E	245	251	Right-handed alpha
Helix 16	AB7	A	9	29	Right-handed alpha
Helix 17	AB8	A	32	41	Right-handed alpha
Helix 18	AB9	A	45	57	Right-handed alpha
Helix 19	AC1	A	123	139	Right-handed alpha
Helix 20	AC2	A	140	142	Right-handed 310
Helix 21	AC3	A	177	187	Right-handed alpha
Helix 22	AC4	A	195	206	Right-handed alpha
Helix 23	AC5	A	244	248	Right-handed 310
Helix 24	AC6	A	265	270	Right-handed alpha
Helix 25	AC7	A	270	284	Right-handed alpha
Helix 26	AC8	A	288	292	Right-handed 310
Helix 27	AC9	A	296	307	Right-handed alpha
Helix 28	AD1	A	308	334	Right-handed alpha
Helix 29	AD2	A	342	346	Right-handed 310
Helix 30	AD3	A	347	362	Right-handed alpha
Helix 31	AD4	A	364	369	Right-handed alpha
Helix 32	AD5	A	382	385	Right-handed 310
Helix 33	AD6	A	386	396	Right-handed alpha
Helix 34	AD7	A	399	404	Right-handed alpha
Helix 35	AD8	B	9	29	Right-handed alpha
Helix 36	AD9	B	32	40	Right-handed alpha
Helix 37	AE1	B	43	57	Right-handed alpha
Helix 38	AE2	B	123	140	Right-handed alpha
Helix 39	AE3	B	141	143	Right-handed 310
Helix 40	AE4	B	177	187	Right-handed alpha
Helix 41	AE5	B	195	206	Right-handed alpha
Helix 42	AE6	B	244	248	Right-handed 310
Helix 43	AE7	B	265	270	Right-handed alpha
Helix 44	AE8	B	270	283	Right-handed alpha
Helix 45	AE9	B	296	307	Right-handed alpha
Helix 46	AF1	B	308	334	Right-handed alpha
Helix 47	AF2	B	342	346	Right-handed 310
Helix 48	AF3	B	347	362	Right-handed alpha
Helix 49	AF4	B	364	369	Right-handed alpha
Helix 50	AF5	B	384	396	Right-handed alpha
Helix 51	AF6	B	397	405	Right-handed alpha
Helix 52	AF7	F	18	23	Right-handed alpha
Helix 53	AF8	F	25	29	Right-handed 310
Helix 54	AF9	F	32	50	Right-handed alpha
Helix 55	AG1	F	62	74	Right-handed alpha
Helix 56	AG2	F	75	80	Right-handed alpha
Helix 57	AG3	F	81	85	Right-handed 310
Helix 58	AG4	F	131	138	Right-handed alpha
Helix 59	AG5	F	144	155	Right-handed alpha
Helix 60	AG6	F	172	195	Right-handed alpha
Helix 61	AG7	F	196	199	Right-handed 310
Helix 62	AG8	F	202	207	Right-handed 310
Helix 63	AG9	F	208	223	Right-handed alpha
Helix 64	AH1	F	224	227	Right-handed 310
Helix 65	AH2	F	231	243	Right-handed alpha
Helix 66	AH3	F	245	251	Right-handed alpha
Helix 67	AH4	C	9	29	Right-handed alpha
Helix 68	AH5	C	32	41	Right-handed alpha
Helix 69	AH6	C	45	57	Right-handed alpha
Helix 70	AH7	C	123	139	Right-handed alpha
Helix 71	AH8	C	140	142	Right-handed 310
Helix 72	AH9	C	177	187	Right-handed alpha
Helix 73	AI1	C	195	206	Right-handed alpha
Helix 74	AI2	C	244	248	Right-handed 310
Helix 75	AI3	C	265	270	Right-handed alpha
Helix 76	AI4	C	270	284	Right-handed alpha
Helix 77	AI5	C	288	292	Right-handed 310
Helix 78	AI6	C	296	307	Right-handed alpha
Helix 79	AI7	C	308	334	Right-handed alpha
Helix 80	AI8	C	342	346	Right-handed 310
Helix 81	AI9	C	347	362	Right-handed alpha
Helix 82	AJ1	C	364	369	Right-handed alpha
Helix 83	AJ2	C	382	385	Right-handed 310
Helix 84	AJ3	C	386	396	Right-handed alpha
Helix 85	AJ4	C	399	404	Right-handed alpha
Helix 86	AJ5	D	9	29	Right-handed alpha
Helix 87	AJ6	D	32	40	Right-handed alpha
Helix 88	AJ7	D	43	57	Right-handed alpha
Helix 89	AJ8	D	123	140	Right-handed alpha
Helix 90	AJ9	D	141	143	Right-handed 310
Helix 91	AK1	D	177	187	Right-handed alpha
Helix 92	AK2	D	195	206	Right-handed alpha
Helix 93	AK3	D	244	248	Right-handed 310
Helix 94	AK4	D	265	270	Right-handed alpha
Helix 95	AK5	D	270	283	Right-handed alpha
Helix 96	AK6	D	296	307	Right-handed alpha
Helix 97	AK7	D	308	334	Right-handed alpha
Helix 98	AK8	D	342	346	Right-handed 310
Helix 99	AK9	D	347	362	Right-handed alpha
Helix 100	AL1	D	364	369	Right-handed alpha
Helix 101	AL2	D	384	396	Right-handed alpha
Helix 102	AL3	D	397	405	Right-handed alpha

There are 18 sheets in PDB entry 9SRW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	53	first strand
Strand 2	E	89	93	parallel
Strand 3	E	127	130	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	77	80	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	115	first strand
Strand 2	A	96	103	anti-parallel
Strand 3	A	86	92	anti-parallel
Strand 4	A	146	153	parallel
Strand 5	A	190	194	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	163	166	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	225	230	anti-parallel
Strand 3	A	215	219	anti-parallel
Strand 4	A	337	341	parallel
Strand 5	A	372	375	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	78	80	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	115	first strand
Strand 2	B	96	103	anti-parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	145	153	parallel
Strand 5	B	190	194	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	163	166	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	224	230	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	337	341	parallel
Strand 5	B	373	375	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	53	first strand
Strand 2	F	89	93	parallel
Strand 3	F	127	130	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	77	80	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	96	103	anti-parallel
Strand 3	C	86	92	anti-parallel
Strand 4	C	146	153	parallel
Strand 5	C	190	194	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	158	first strand
Strand 2	C	163	166	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	234	first strand
Strand 2	C	225	230	anti-parallel
Strand 3	C	215	219	anti-parallel
Strand 4	C	337	341	parallel
Strand 5	C	372	375	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	78	80	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	115	first strand
Strand 2	D	96	103	anti-parallel
Strand 3	D	85	92	anti-parallel
Strand 4	D	145	153	parallel
Strand 5	D	190	194	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	163	166	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	234	first strand
Strand 2	D	224	230	anti-parallel
Strand 3	D	215	220	anti-parallel
Strand 4	D	337	341	parallel
Strand 5	D	373	375	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SRW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SRW