Analysis of interatomic Contacts of Structural Units in PDB entry:
9SSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SSD entry

There is 1 chain in PDB entry 9SSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 302LEU 790
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9SSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
338 359Right-handed alpha
Helix 2
AA2
A
364 367Right-handed 310
Helix 3
AA3
A
368 386Right-handed alpha
Helix 4
AA4
A
395 410Right-handed alpha
Helix 5
AA5
A
411 414Right-handed 310
Helix 6
AA6
A
458 461Right-handed 310
Helix 7
AA7
A
462 467Right-handed alpha
Helix 8
AA8
A
467 474Right-handed alpha
Helix 9
AA9
A
509 516Right-handed alpha
Helix 10
AB1
A
517 531Right-handed alpha
Helix 11
AB2
A
534 542Right-handed alpha
Helix 12
AB3
A
553 557Right-handed 310
Helix 13
AB4
A
563 576Right-handed alpha
Helix 14
AB5
A
609 627Right-handed alpha
Helix 15
AB6
A
631 640Right-handed alpha
Helix 16
AB7
A
640 645Right-handed alpha
Helix 17
AB8
A
656 658Right-handed 310
Helix 18
AB9
A
691 708Right-handed alpha
Helix 19
AC1
A
775 788Right-handed alpha
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There are 6 sheets in PDB entry 9SSD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 316first strand
Strand 2
A
303 306anti-parallel
Strand 3
A
389 392parallel
Strand 4
A
586 590anti-parallel
Strand 5
A
596 599anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 438first strand
Strand 2
A
421 428anti-parallel
Strand 3
A
670 677anti-parallel
Strand 4
A
660 666anti-parallel
Strand 5
A
649 654anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
506 508anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 580first strand
Strand 2
A
605 606anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 729first strand
Strand 2
A
752 757anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 741first strand
Strand 2
A
744 748anti-parallel
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