Analysis of interatomic Contacts of Structural Units in PDB entry:
9SSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SSS entry

There is 1 chain in PDB entry 9SSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 665ASP 1265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9SSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
665 669Right-handed 310
Helix 2
AA2
A
670 682Right-handed alpha
Helix 3
AA3
A
686 696Right-handed alpha
Helix 4
AA4
A
703 710Right-handed alpha
Helix 5
AA5
A
710 725Right-handed alpha
Helix 6
AA6
A
729 763Right-handed alpha
Helix 7
AA7
A
786 799Right-handed alpha
Helix 8
AA8
A
811 822Right-handed alpha
Helix 9
AA9
A
837 850Right-handed alpha
Helix 10
AB1
A
864 872Right-handed alpha
Helix 11
AB2
A
873 876Right-handed 310
Helix 12
AB3
A
888 896Right-handed alpha
Helix 13
AB4
A
898 909Right-handed alpha
Helix 14
AB5
A
912 924Right-handed alpha
Helix 15
AB6
A
925 927Right-handed 310
Helix 16
AB7
A
931 938Right-handed alpha
Helix 17
AB8
A
965 970Right-handed alpha
Helix 18
AB9
A
971 973Right-handed 310
Helix 19
AC1
A
975 982Right-handed alpha
Helix 20
AC2
A
994 999Right-handed 310
Helix 21
AC3
A
1002 1024Right-handed alpha
Helix 22
AC4
A
1081 1086Right-handed 310
Helix 23
AC5
A
1088 1092Right-handed 310
Helix 24
AC6
A
1106 1118Right-handed alpha
Helix 25
AC7
A
1119 1148Right-handed alpha
Helix 26
AC8
A
1159 1164Right-handed alpha
Helix 27
AC9
A
1184 1194Right-handed alpha
Helix 28
AD1
A
1194 1199Right-handed alpha
Helix 29
AD2
A
1234 1246Right-handed alpha
Helix 30
AD3
A
1248 1256Right-handed alpha
Helix 31
AD4
A
1257 1260Right-handed 310
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There are 4 sheets in PDB entry 9SSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
802 805first strand
Strand 2
A
774 777parallel
Strand 3
A
826 828parallel
Strand 4
A
856 858parallel
Strand 5
A
880 882parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
957 964first strand
Strand 2
A
1027 1038anti-parallel
Strand 3
A
1043 1046anti-parallel
Strand 4
A
1060 1063anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
957 964first strand
Strand 2
A
1027 1038anti-parallel
Strand 3
A
1095 1105anti-parallel
Strand 4
A
1214 1219anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1202 1203first strand
Strand 2
A
1209 1210anti-parallel
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