Analysis of interatomic Contacts of Structural Units in PDB entry:
9SSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SSV entry

There is 1 chain in PDB entry 9SSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 928ASP 1265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9SSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
931 936Right-handed alpha
Helix 2
AA2
A
965 970Right-handed alpha
Helix 3
AA3
A
971 973Right-handed 310
Helix 4
AA4
A
975 980Right-handed alpha
Helix 5
AA5
A
994 998Right-handed 310
Helix 6
AA6
A
1002 1024Right-handed alpha
Helix 7
AA7
A
1052 1056Right-handed 310
Helix 8
AA8
A
1081 1086Right-handed 310
Helix 9
AA9
A
1088 1092Right-handed 310
Helix 10
AB1
A
1106 1117Right-handed alpha
Helix 11
AB2
A
1119 1148Right-handed alpha
Helix 12
AB3
A
1159 1164Right-handed alpha
Helix 13
AB4
A
1184 1194Right-handed alpha
Helix 14
AB5
A
1194 1200Right-handed alpha
Helix 15
AB6
A
1234 1246Right-handed alpha
Helix 16
AB7
A
1248 1256Right-handed alpha
Helix 17
AB8
A
1257 1260Right-handed 310
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There are 3 sheets in PDB entry 9SSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
957 961first strand
Strand 2
A
1027 1040anti-parallel
Strand 3
A
1043 1046anti-parallel
Strand 4
A
1060 1063anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
957 961first strand
Strand 2
A
1027 1040anti-parallel
Strand 3
A
1095 1105anti-parallel
Strand 4
A
1214 1219anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1202 1203first strand
Strand 2
A
1209 1210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il