Analysis of interatomic Contacts of Structural Units in PDB entry:
9SUQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SUQ entry

There are 2 chains in PDB entry 9SUQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	SER 374
B	GLU 1	PRO 372

There are 24 helices in PDB entry 9SUQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed alpha
Helix 2	AA2	A	23	32	Right-handed alpha
Helix 3	AA3	A	88	93	Right-handed alpha
Helix 4	AA4	A	98	102	Right-handed 310
Helix 5	AA5	A	150	156	Right-handed alpha
Helix 6	AA6	A	166	174	Right-handed 310
Helix 7	AA7	A	176	184	Right-handed alpha
Helix 8	AA8	A	214	216	Right-handed 310
Helix 9	AA9	A	266	277	Right-handed alpha
Helix 10	AB1	A	290	297	Right-handed 310
Helix 11	AB2	A	312	316	Right-handed alpha
Helix 12	AB3	A	346	351	Right-handed alpha
Helix 13	AB4	B	12	20	Right-handed alpha
Helix 14	AB5	B	23	32	Right-handed alpha
Helix 15	AB6	B	88	93	Right-handed alpha
Helix 16	AB7	B	98	102	Right-handed 310
Helix 17	AB8	B	150	156	Right-handed alpha
Helix 18	AB9	B	166	174	Right-handed 310
Helix 19	AC1	B	176	184	Right-handed alpha
Helix 20	AC2	B	214	216	Right-handed 310
Helix 21	AC3	B	266	278	Right-handed alpha
Helix 22	AC4	B	293	297	Right-handed 310
Helix 23	AC5	B	312	316	Right-handed alpha
Helix 24	AC6	B	346	351	Right-handed alpha

There are 10 sheets in PDB entry 9SUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	116	first strand
Strand 2	A	119	132	anti-parallel
Strand 3	A	53	59	anti-parallel
Strand 4	A	3	9	anti-parallel
Strand 5	A	203	210	anti-parallel
Strand 6	A	191	198	anti-parallel
Strand 7	A	353	358	anti-parallel
Strand 8	A	363	369	anti-parallel
Strand 9	A	218	226	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	116	first strand
Strand 2	A	119	132	anti-parallel
Strand 3	A	135	147	anti-parallel
Strand 4	A	77	80	parallel
Strand 5	A	160	163	anti-parallel
Strand 6	A	64	71	parallel
Strand 7	A	53	59	anti-parallel
Strand 8	A	3	9	anti-parallel
Strand 9	A	203	210	anti-parallel
Strand 10	A	191	198	anti-parallel
Strand 11	A	353	358	anti-parallel
Strand 12	A	363	369	anti-parallel
Strand 13	A	218	226	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	237	first strand
Strand 2	A	252	256	anti-parallel
Strand 3	A	343	345	parallel
Strand 4	A	263	265	anti-parallel
Strand 5	A	332	334	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	247	first strand
Strand 2	A	239	242	anti-parallel
Strand 3	A	300	304	anti-parallel
Strand 4	A	307	311	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	287	289	anti-parallel
Strand 3	A	327	330	anti-parallel
Strand 4	A	317	320	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	116	first strand
Strand 2	B	119	132	anti-parallel
Strand 3	B	53	59	anti-parallel
Strand 4	B	3	9	anti-parallel
Strand 5	B	202	210	anti-parallel
Strand 6	B	191	199	anti-parallel
Strand 7	B	353	358	anti-parallel
Strand 8	B	363	369	anti-parallel
Strand 9	B	218	226	anti-parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	116	first strand
Strand 2	B	119	132	anti-parallel
Strand 3	B	135	147	anti-parallel
Strand 4	B	77	80	parallel
Strand 5	B	160	163	anti-parallel
Strand 6	B	64	71	parallel
Strand 7	B	53	59	anti-parallel
Strand 8	B	3	9	anti-parallel
Strand 9	B	202	210	anti-parallel
Strand 10	B	191	199	anti-parallel
Strand 11	B	353	358	anti-parallel
Strand 12	B	363	369	anti-parallel
Strand 13	B	218	226	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	237	first strand
Strand 2	B	252	256	anti-parallel
Strand 3	B	342	345	parallel
Strand 4	B	263	265	anti-parallel
Strand 5	B	332	334	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	247	first strand
Strand 2	B	239	242	anti-parallel
Strand 3	B	300	304	anti-parallel
Strand 4	B	307	311	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	287	289	anti-parallel
Strand 3	B	326	330	anti-parallel
Strand 4	B	317	321	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SUQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SUQ