Analysis of interatomic Contacts of Structural Units in PDB entry:
9SV0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SV0 entry

There are 4 chains in PDB entry 9SV0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	ALA 68
B	GLN 127	PRO 390
C	ARG 9	ALA 65
D	GLN 127	SER 388

There are 39 helices in PDB entry 9SV0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	20	Right-handed alpha
Helix 2	AA2	A	23	31	Right-handed alpha
Helix 3	AA3	A	37	49	Right-handed alpha
Helix 4	AA4	A	51	68	Right-handed alpha
Helix 5	AA5	B	129	131	Right-handed 310
Helix 6	AA6	B	166	173	Right-handed alpha
Helix 7	AA7	B	174	186	Right-handed alpha
Helix 8	AA8	B	217	226	Right-handed alpha
Helix 9	AA9	B	229	250	Right-handed alpha
Helix 10	AB1	B	258	260	Right-handed 310
Helix 11	AB2	B	274	278	Right-handed 310
Helix 12	AB3	B	282	284	Right-handed 310
Helix 13	AB4	B	292	296	Right-handed 310
Helix 14	AB5	B	297	302	Right-handed alpha
Helix 15	AB6	B	308	325	Right-handed alpha
Helix 16	AB7	B	333	343	Right-handed alpha
Helix 17	AB8	B	353	364	Right-handed alpha
Helix 18	AB9	B	367	371	Right-handed 310
Helix 19	AC1	B	373	379	Right-handed alpha
Helix 20	AC2	B	380	387	Right-handed alpha
Helix 21	AC3	C	10	20	Right-handed alpha
Helix 22	AC4	C	23	31	Right-handed alpha
Helix 23	AC5	C	37	49	Right-handed alpha
Helix 24	AC6	C	51	65	Right-handed alpha
Helix 25	AC7	D	129	131	Right-handed 310
Helix 26	AC8	D	166	173	Right-handed alpha
Helix 27	AC9	D	174	186	Right-handed alpha
Helix 28	AD1	D	218	226	Right-handed alpha
Helix 29	AD2	D	229	250	Right-handed alpha
Helix 30	AD3	D	258	260	Right-handed 310
Helix 31	AD4	D	274	278	Right-handed 310
Helix 32	AD5	D	292	296	Right-handed 310
Helix 33	AD6	D	297	302	Right-handed alpha
Helix 34	AD7	D	308	325	Right-handed alpha
Helix 35	AD8	D	333	343	Right-handed alpha
Helix 36	AD9	D	353	364	Right-handed alpha
Helix 37	AE1	D	367	371	Right-handed 310
Helix 38	AE2	D	373	379	Right-handed alpha
Helix 39	AE3	D	380	387	Right-handed alpha

There are 6 sheets in PDB entry 9SV0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	142	first strand
Strand 2	B	145	152	anti-parallel
Strand 3	B	158	165	anti-parallel
Strand 4	B	205	210	anti-parallel
Strand 5	B	196	201	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	279	280	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	270	272	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	141	first strand
Strand 2	D	146	152	anti-parallel
Strand 3	D	158	165	anti-parallel
Strand 4	D	205	210	anti-parallel
Strand 5	D	196	201	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	262	264	anti-parallel
Strand 3	D	270	272	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	253	first strand
Strand 2	D	279	280	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SV0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SV0