Analysis of interatomic Contacts of Structural Units in PDB entry:
9SV8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SV8 entry

There are 3 chains in PDB entry 9SV8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 93	ARG 341
B	SER 1	GLN 642
C	ASP 651	CYS 1410

There are 16 helices in PDB entry 9SV8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	279	281	Right-handed 310
Helix 2	AA2	B	55	59	Right-handed 310
Helix 3	AA3	B	263	266	Right-handed 310
Helix 4	AA4	B	281	288	Right-handed alpha
Helix 5	AA5	B	293	298	Right-handed 310
Helix 6	AA6	B	410	414	Right-handed 310
Helix 7	AA7	B	426	430	Right-handed 310
Helix 8	AA8	B	458	465	Right-handed 310
Helix 9	AA9	B	500	504	Right-handed 310
Helix 10	AB1	B	578	584	Right-handed alpha
Helix 11	AB2	B	590	601	Right-handed alpha
Helix 12	AB3	B	612	620	Right-handed alpha
Helix 13	AB4	C	1311	1320	Right-handed alpha
Helix 14	AB5	C	1327	1332	Right-handed alpha
Helix 15	AB6	C	1334	1338	Right-handed 310
Helix 16	AB7	C	1394	1398	Right-handed 310

There are 24 sheets in PDB entry 9SV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	232	233	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	196	200	anti-parallel
Strand 3	A	187	190	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	254	256	anti-parallel
Strand 3	A	295	300	anti-parallel
Strand 4	A	283	288	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	270	272	anti-parallel
Strand 3	A	313	318	anti-parallel
Strand 4	A	330	335	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	21	25	anti-parallel
Strand 3	B	3	9	anti-parallel
Strand 4	B	622	626	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	93	102	parallel
Strand 3	B	82	90	anti-parallel
Strand 4	B	31	39	anti-parallel
Strand 5	B	48	54	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	66	67	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	112	first strand
Strand 2	B	122	130	anti-parallel
Strand 3	B	169	172	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	199	202	parallel
Strand 3	B	180	188	anti-parallel
Strand 4	B	140	146	anti-parallel
Strand 5	B	152	159	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	216	first strand
Strand 2	B	229	237	anti-parallel
Strand 3	B	278	280	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	316	327	parallel
Strand 3	B	301	310	anti-parallel
Strand 4	B	245	255	anti-parallel
Strand 5	B	258	261	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	316	327	parallel
Strand 3	B	301	310	anti-parallel
Strand 4	B	245	255	anti-parallel
Strand 5	B	267	271	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	334	first strand
Strand 2	B	347	355	anti-parallel
Strand 3	B	384	390	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	342	first strand
Strand 2	B	416	423	parallel
Strand 3	B	398	404	anti-parallel
Strand 4	B	366	369	anti-parallel
Strand 5	B	377	378	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	437	first strand
Strand 2	B	448	456	anti-parallel
Strand 3	B	492	498	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	485	first strand
Strand 2	B	467	474	anti-parallel
Strand 3	B	506	516	anti-parallel
Strand 4	B	522	532	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	545	first strand
Strand 2	B	558	566	anti-parallel
Strand 3	C	683	691	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	668	first strand
Strand 2	B	570	577	anti-parallel
Strand 3	C	698	707	anti-parallel
Strand 4	C	711	714	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	672	674	first strand
Strand 2	B	570	577	anti-parallel
Strand 3	C	698	707	anti-parallel
Strand 4	C	718	721	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	726	731	first strand
Strand 2	C	742	750	anti-parallel
Strand 3	C	789	799	anti-parallel
Strand 4	C	769	771	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	737	first strand
Strand 2	C	825	829	parallel
Strand 3	C	803	806	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	779	785	first strand
Strand 2	C	757	763	anti-parallel
Strand 3	C	809	813	anti-parallel
Strand 4	C	819	822	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1258	1266	first strand
Strand 2	C	1279	1289	anti-parallel
Strand 3	C	1356	1362	anti-parallel
Strand 4	C	1308	1310	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1324	1325	first strand
Strand 2	C	1340	1345	anti-parallel
Strand 3	C	1298	1303	anti-parallel
Strand 4	C	1373	1378	anti-parallel
Strand 5	C	1385	1388	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SV8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SV8