Analysis of interatomic Contacts of Structural Units in PDB entry:
9SVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SVK entry

There are 14 chains in PDB entry 9SVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLU 138
C	MET 1	GLU 138
A	MET 1	PHE 63
D	MET 1	GLU 138
E	MET 1	GLU 138
F	MET 1	PHE 63
G	MET 1	GLU 138
H	MET 1	GLU 138
I	MET 1	PHE 63
J	MET 1	GLU 138
K	MET 1	GLU 138
L	MET 1	PHE 63
M	G 1	A 35
N	G 3	A 26

There are 41 helices in PDB entry 9SVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	40	61	Right-handed alpha
Helix 2	AA2	B	89	97	Right-handed alpha
Helix 3	AA3	B	110	119	Right-handed alpha
Helix 4	AA4	B	122	136	Right-handed alpha
Helix 5	AA5	C	40	63	Right-handed alpha
Helix 6	AA6	C	89	99	Right-handed alpha
Helix 7	AA7	C	110	120	Right-handed alpha
Helix 8	AA8	C	122	135	Right-handed alpha
Helix 9	AA9	A	5	15	Right-handed alpha
Helix 10	AB1	A	48	60	Right-handed alpha
Helix 11	AB2	D	40	61	Right-handed alpha
Helix 12	AB3	D	89	96	Right-handed alpha
Helix 13	AB4	D	110	120	Right-handed alpha
Helix 14	AB5	D	122	136	Right-handed alpha
Helix 15	AB6	E	40	47	Right-handed alpha
Helix 16	AB7	E	47	63	Right-handed alpha
Helix 17	AB8	E	89	99	Right-handed alpha
Helix 18	AB9	E	109	120	Right-handed alpha
Helix 19	AC1	E	122	135	Right-handed alpha
Helix 20	AC2	F	5	17	Right-handed alpha
Helix 21	AC3	F	48	60	Right-handed alpha
Helix 22	AC4	G	40	61	Right-handed alpha
Helix 23	AC5	G	89	96	Right-handed alpha
Helix 24	AC6	G	110	120	Right-handed alpha
Helix 25	AC7	G	122	135	Right-handed alpha
Helix 26	AC8	H	40	63	Right-handed alpha
Helix 27	AC9	H	89	99	Right-handed alpha
Helix 28	AD1	H	110	118	Right-handed alpha
Helix 29	AD2	H	122	135	Right-handed alpha
Helix 30	AD3	I	5	16	Right-handed alpha
Helix 31	AD4	I	48	60	Right-handed alpha
Helix 32	AD5	J	40	61	Right-handed alpha
Helix 33	AD6	J	89	96	Right-handed alpha
Helix 34	AD7	J	110	120	Right-handed alpha
Helix 35	AD8	J	122	135	Right-handed alpha
Helix 36	AD9	K	40	60	Right-handed alpha
Helix 37	AE1	K	89	99	Right-handed alpha
Helix 38	AE2	K	110	120	Right-handed alpha
Helix 39	AE3	K	122	135	Right-handed alpha
Helix 40	AE4	L	5	17	Right-handed alpha
Helix 41	AE5	L	49	60	Right-handed alpha

There are 14 sheets in PDB entry 9SVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	15	20	anti-parallel
Strand 3	B	3	12	anti-parallel
Strand 4	B	81	88	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	27	31	anti-parallel
Strand 4	A	39	42	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	109	first strand
Strand 2	E	101	107	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	87	88	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	7	10	anti-parallel
Strand 3	C	82	84	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	109	first strand
Strand 2	D	101	109	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	15	20	anti-parallel
Strand 3	D	3	12	anti-parallel
Strand 4	D	81	88	anti-parallel
Strand 5	E	81	88	parallel
Strand 6	E	3	11	anti-parallel
Strand 7	E	16	20	anti-parallel
Strand 8	E	36	38	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	27	31	anti-parallel
Strand 4	F	39	42	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	38	first strand
Strand 2	G	15	20	anti-parallel
Strand 3	G	3	12	anti-parallel
Strand 4	G	81	88	anti-parallel
Strand 5	H	81	88	parallel
Strand 6	H	3	10	anti-parallel
Strand 7	H	17	20	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	99	first strand
Strand 2	I	19	24	anti-parallel
Strand 3	I	27	31	anti-parallel
Strand 4	I	39	42	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	109	first strand
Strand 2	K	101	109	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	109	first strand
Strand 2	J	101	109	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	38	first strand
Strand 2	J	15	20	anti-parallel
Strand 3	J	3	12	anti-parallel
Strand 4	J	81	88	anti-parallel
Strand 5	K	81	87	parallel
Strand 6	K	4	11	anti-parallel
Strand 7	K	16	18	anti-parallel
Strand 8	K	36	38	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	98	99	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	27	31	anti-parallel
Strand 4	L	39	42	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SVK