Analysis of interatomic Contacts of Structural Units in PDB entry:
9SVY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SVY entry

There are 13 chains in PDB entry 9SVY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 4	TRP 314
M	C 3	A 31
N	T 1	A 21
C	GLN 11	THR 349
D	ASP 2	SER 345
A	SER 22	CYS 280
E	GLY 21	ASP 339
F	GLY 21	ASP 339
G	GLY 21	ASP 339
H	GLY 21	ASP 339
I	GLY 21	ASP 339
J	GLY 21	ASP 339
K	GLY 21	ASP 339

There are177 helices in PDB entry 9SVY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	13	20	Right-handed alpha
Helix 2	AA2	B	21	23	Right-handed 310
Helix 3	AA3	B	28	33	Right-handed alpha
Helix 4	AA4	B	38	43	Right-handed alpha
Helix 5	AA5	B	46	61	Right-handed alpha
Helix 6	AA6	B	68	79	Right-handed alpha
Helix 7	AA7	B	86	93	Right-handed alpha
Helix 8	AA8	B	112	128	Right-handed alpha
Helix 9	AA9	B	142	154	Right-handed alpha
Helix 10	AB1	B	156	165	Right-handed alpha
Helix 11	AB2	B	174	192	Right-handed alpha
Helix 12	AB3	B	208	213	Right-handed alpha
Helix 13	AB4	B	221	240	Right-handed alpha
Helix 14	AB5	B	264	270	Right-handed alpha
Helix 15	AB6	C	13	17	Right-handed 310
Helix 16	AB7	C	20	31	Right-handed alpha
Helix 17	AB8	C	35	41	Right-handed 310
Helix 18	AB9	C	42	51	Right-handed alpha
Helix 19	AC1	C	53	67	Right-handed alpha
Helix 20	AC2	C	86	97	Right-handed alpha
Helix 21	AC3	C	104	111	Right-handed alpha
Helix 22	AC4	C	130	142	Right-handed alpha
Helix 23	AC5	C	143	144	Right-handed 310
Helix 24	AC6	C	145	149	Right-handed 310
Helix 25	AC7	C	165	188	Right-handed alpha
Helix 26	AC8	C	190	198	Right-handed alpha
Helix 27	AC9	C	200	206	Right-handed alpha
Helix 28	AD1	C	215	233	Right-handed alpha
Helix 29	AD2	C	245	249	Right-handed 310
Helix 30	AD3	C	254	276	Right-handed alpha
Helix 31	AD4	C	303	308	Right-handed 310
Helix 32	AD5	D	2	6	Right-handed 310
Helix 33	AD6	D	9	19	Right-handed alpha
Helix 34	AD7	D	23	30	Right-handed alpha
Helix 35	AD8	D	31	40	Right-handed alpha
Helix 36	AD9	D	42	59	Right-handed alpha
Helix 37	AE1	D	65	71	Right-handed alpha
Helix 38	AE2	D	86	94	Right-handed alpha
Helix 39	AE3	D	112	124	Right-handed alpha
Helix 40	AE4	D	125	126	Right-handed 310
Helix 41	AE5	D	127	131	Right-handed 310
Helix 42	AE6	D	147	162	Right-handed alpha
Helix 43	AE7	D	166	171	Right-handed alpha
Helix 44	AE8	D	175	177	Right-handed 310
Helix 45	AE9	D	186	197	Right-handed alpha
Helix 46	AF1	D	197	204	Right-handed alpha
Helix 47	AF2	D	215	223	Right-handed alpha
Helix 48	AF3	D	227	250	Right-handed alpha
Helix 49	AF4	D	285	290	Right-handed alpha
Helix 50	AF5	A	23	28	Right-handed alpha
Helix 51	AF6	A	53	67	Right-handed alpha
Helix 52	AF7	A	68	72	Right-handed 310
Helix 53	AF8	A	88	100	Right-handed alpha
Helix 54	AF9	A	104	113	Right-handed alpha
Helix 55	AG1	A	122	133	Right-handed alpha
Helix 56	AG2	A	133	140	Right-handed alpha
Helix 57	AG3	A	154	162	Right-handed alpha
Helix 58	AG4	A	170	187	Right-handed alpha
Helix 59	AG5	A	228	235	Right-handed alpha
Helix 60	AG6	E	26	32	Right-handed alpha
Helix 61	AG7	E	34	44	Right-handed alpha
Helix 62	AG8	E	48	55	Right-handed alpha
Helix 63	AG9	E	56	62	Right-handed alpha
Helix 64	AH1	E	67	79	Right-handed alpha
Helix 65	AH2	E	89	94	Right-handed alpha
Helix 66	AH3	E	95	99	Right-handed 310
Helix 67	AH4	E	106	114	Right-handed alpha
Helix 68	AH5	E	132	144	Right-handed alpha
Helix 69	AH6	E	167	178	Right-handed alpha
Helix 70	AH7	E	181	188	Right-handed alpha
Helix 71	AH8	E	196	214	Right-handed alpha
Helix 72	AH9	E	227	232	Right-handed alpha
Helix 73	AI1	E	234	236	Right-handed 310
Helix 74	AI2	E	237	260	Right-handed alpha
Helix 75	AI3	E	288	296	Right-handed alpha
Helix 76	AI4	F	24	32	Right-handed 310
Helix 77	AI5	F	34	45	Right-handed alpha
Helix 78	AI6	F	48	54	Right-handed alpha
Helix 79	AI7	F	56	62	Right-handed alpha
Helix 80	AI8	F	67	82	Right-handed alpha
Helix 81	AI9	F	89	97	Right-handed alpha
Helix 82	AJ1	F	106	114	Right-handed alpha
Helix 83	AJ2	F	132	144	Right-handed alpha
Helix 84	AJ3	F	145	146	Right-handed 310
Helix 85	AJ4	F	147	151	Right-handed 310
Helix 86	AJ5	F	167	178	Right-handed alpha
Helix 87	AJ6	F	181	188	Right-handed alpha
Helix 88	AJ7	F	196	214	Right-handed alpha
Helix 89	AJ8	F	227	232	Right-handed alpha
Helix 90	AJ9	F	234	236	Right-handed 310
Helix 91	AK1	F	237	260	Right-handed alpha
Helix 92	AK2	F	289	296	Right-handed alpha
Helix 93	AK3	G	26	32	Right-handed alpha
Helix 94	AK4	G	34	45	Right-handed alpha
Helix 95	AK5	G	48	54	Right-handed alpha
Helix 96	AK6	G	56	62	Right-handed alpha
Helix 97	AK7	G	67	82	Right-handed alpha
Helix 98	AK8	G	89	97	Right-handed alpha
Helix 99	AK9	G	106	113	Right-handed alpha
Helix 100	AL1	G	132	144	Right-handed alpha
Helix 101	AL2	G	145	146	Right-handed 310
Helix 102	AL3	G	147	151	Right-handed 310
Helix 103	AL4	G	167	179	Right-handed alpha
Helix 104	AL5	G	181	188	Right-handed alpha
Helix 105	AL6	G	196	214	Right-handed alpha
Helix 106	AL7	G	227	232	Right-handed alpha
Helix 107	AL8	G	234	236	Right-handed 310
Helix 108	AL9	G	237	260	Right-handed alpha
Helix 109	AM1	G	288	296	Right-handed alpha
Helix 110	AM2	H	26	32	Right-handed alpha
Helix 111	AM3	H	34	45	Right-handed alpha
Helix 112	AM4	H	48	54	Right-handed alpha
Helix 113	AM5	H	56	62	Right-handed alpha
Helix 114	AM6	H	67	82	Right-handed alpha
Helix 115	AM7	H	89	97	Right-handed alpha
Helix 116	AM8	H	106	114	Right-handed alpha
Helix 117	AM9	H	133	144	Right-handed alpha
Helix 118	AN1	H	145	146	Right-handed 310
Helix 119	AN2	H	147	151	Right-handed 310
Helix 120	AN3	H	167	178	Right-handed alpha
Helix 121	AN4	H	181	187	Right-handed alpha
Helix 122	AN5	H	196	211	Right-handed alpha
Helix 123	AN6	H	227	232	Right-handed alpha
Helix 124	AN7	H	234	236	Right-handed 310
Helix 125	AN8	H	237	260	Right-handed alpha
Helix 126	AN9	H	288	296	Right-handed alpha
Helix 127	AO1	I	26	31	Right-handed alpha
Helix 128	AO2	I	34	44	Right-handed alpha
Helix 129	AO3	I	48	55	Right-handed alpha
Helix 130	AO4	I	56	62	Right-handed alpha
Helix 131	AO5	I	67	82	Right-handed alpha
Helix 132	AO6	I	89	97	Right-handed alpha
Helix 133	AO7	I	106	114	Right-handed alpha
Helix 134	AO8	I	132	144	Right-handed alpha
Helix 135	AO9	I	145	146	Right-handed 310
Helix 136	AP1	I	147	151	Right-handed 310
Helix 137	AP2	I	167	178	Right-handed alpha
Helix 138	AP3	I	181	188	Right-handed alpha
Helix 139	AP4	I	196	214	Right-handed alpha
Helix 140	AP5	I	227	232	Right-handed alpha
Helix 141	AP6	I	234	236	Right-handed 310
Helix 142	AP7	I	237	260	Right-handed alpha
Helix 143	AP8	I	288	296	Right-handed alpha
Helix 144	AP9	J	24	32	Right-handed 310
Helix 145	AQ1	J	34	45	Right-handed alpha
Helix 146	AQ2	J	48	54	Right-handed alpha
Helix 147	AQ3	J	56	62	Right-handed alpha
Helix 148	AQ4	J	67	82	Right-handed alpha
Helix 149	AQ5	J	89	96	Right-handed alpha
Helix 150	AQ6	J	97	99	Right-handed 310
Helix 151	AQ7	J	106	113	Right-handed alpha
Helix 152	AQ8	J	132	144	Right-handed alpha
Helix 153	AQ9	J	145	146	Right-handed 310
Helix 154	AR1	J	147	151	Right-handed 310
Helix 155	AR2	J	167	178	Right-handed alpha
Helix 156	AR3	J	181	188	Right-handed alpha
Helix 157	AR4	J	196	214	Right-handed alpha
Helix 158	AR5	J	227	232	Right-handed alpha
Helix 159	AR6	J	234	236	Right-handed 310
Helix 160	AR7	J	237	260	Right-handed alpha
Helix 161	AR8	J	289	296	Right-handed alpha
Helix 162	AR9	K	26	32	Right-handed alpha
Helix 163	AS1	K	34	45	Right-handed alpha
Helix 164	AS2	K	48	54	Right-handed alpha
Helix 165	AS3	K	56	63	Right-handed alpha
Helix 166	AS4	K	67	82	Right-handed alpha
Helix 167	AS5	K	89	97	Right-handed alpha
Helix 168	AS6	K	106	114	Right-handed alpha
Helix 169	AS7	K	132	144	Right-handed alpha
Helix 170	AS8	K	145	146	Right-handed 310
Helix 171	AS9	K	147	151	Right-handed 310
Helix 172	AT1	K	167	178	Right-handed alpha
Helix 173	AT2	K	181	188	Right-handed alpha
Helix 174	AT3	K	196	214	Right-handed alpha
Helix 175	AT4	K	227	232	Right-handed alpha
Helix 176	AT5	K	237	260	Right-handed alpha
Helix 177	AT6	K	288	296	Right-handed alpha

There are 30 sheets in PDB entry 9SVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	A	115	119	anti-parallel
Strand 3	A	77	82	parallel
Strand 4	A	143	148	parallel
Strand 5	A	190	194	parallel
Strand 6	A	42	47	parallel
Strand 7	A	237	243	parallel
Strand 8	A	252	259	anti-parallel
Strand 9	A	266	273	anti-parallel
Strand 10	A	276	279	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	97	98	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	131	136	parallel
Strand 3	B	200	205	parallel
Strand 4	B	244	249	parallel
Strand 5	B	102	107	parallel
Strand 6	B	274	280	parallel
Strand 7	B	290	297	anti-parallel
Strand 8	B	306	310	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	260	262	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	347	first strand
Strand 2	C	336	342	anti-parallel
Strand 3	C	321	328	anti-parallel
Strand 4	C	311	318	anti-parallel
Strand 5	C	120	125	parallel
Strand 6	C	279	283	parallel
Strand 7	C	236	242	parallel
Strand 8	C	154	159	parallel
Strand 9	C	208	212	parallel
Strand 10	D	63	64	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	291	first strand
Strand 2	C	294	299	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	82	first strand
Strand 2	D	97	98	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	339	first strand
Strand 2	D	327	332	anti-parallel
Strand 3	D	313	319	anti-parallel
Strand 4	D	294	300	anti-parallel
Strand 5	D	102	106	parallel
Strand 6	D	253	257	parallel
Strand 7	D	207	212	parallel
Strand 8	D	136	141	parallel
Strand 9	D	179	183	parallel
Strand 10	E	87	88	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	280	282	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	117	118	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	333	335	first strand
Strand 2	E	324	330	anti-parallel
Strand 3	E	309	316	anti-parallel
Strand 4	E	298	304	anti-parallel
Strand 5	E	122	126	parallel
Strand 6	E	262	267	parallel
Strand 7	E	216	222	parallel
Strand 8	E	156	161	parallel
Strand 9	E	189	193	parallel
Strand 10	F	87	88	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	271	first strand
Strand 2	E	284	286	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	102	first strand
Strand 2	F	117	118	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	333	335	first strand
Strand 2	F	324	330	anti-parallel
Strand 3	F	309	316	anti-parallel
Strand 4	F	298	304	anti-parallel
Strand 5	F	122	126	parallel
Strand 6	F	262	267	parallel
Strand 7	F	216	222	parallel
Strand 8	F	156	161	parallel
Strand 9	F	189	193	parallel
Strand 10	G	87	88	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	271	first strand
Strand 2	F	284	286	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	102	first strand
Strand 2	G	117	118	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	333	335	first strand
Strand 2	G	324	330	anti-parallel
Strand 3	G	309	316	anti-parallel
Strand 4	G	298	304	anti-parallel
Strand 5	G	122	126	parallel
Strand 6	G	262	266	parallel
Strand 7	G	216	222	parallel
Strand 8	G	156	161	parallel
Strand 9	G	189	193	parallel
Strand 10	H	87	88	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	271	first strand
Strand 2	G	284	286	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	102	first strand
Strand 2	H	117	118	anti-parallel

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There are 10 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	333	335	first strand
Strand 2	H	324	330	anti-parallel
Strand 3	H	309	316	anti-parallel
Strand 4	H	298	304	anti-parallel
Strand 5	H	122	127	parallel
Strand 6	H	262	266	parallel
Strand 7	H	216	222	parallel
Strand 8	H	156	161	parallel
Strand 9	H	189	193	parallel
Strand 10	I	87	88	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	269	271	first strand
Strand 2	H	284	286	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	102	first strand
Strand 2	I	117	118	anti-parallel

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There are 10 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	333	335	first strand
Strand 2	I	324	330	anti-parallel
Strand 3	I	309	316	anti-parallel
Strand 4	I	298	304	anti-parallel
Strand 5	I	122	126	parallel
Strand 6	I	262	267	parallel
Strand 7	I	216	222	parallel
Strand 8	I	156	161	parallel
Strand 9	I	189	193	parallel
Strand 10	J	87	88	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	269	271	first strand
Strand 2	I	284	286	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	101	102	first strand
Strand 2	J	117	118	anti-parallel

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There are 10 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	333	335	first strand
Strand 2	J	324	330	anti-parallel
Strand 3	J	309	316	anti-parallel
Strand 4	J	298	304	anti-parallel
Strand 5	J	122	127	parallel
Strand 6	J	262	266	parallel
Strand 7	J	216	222	parallel
Strand 8	J	156	161	parallel
Strand 9	J	189	193	parallel
Strand 10	K	87	88	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	269	271	first strand
Strand 2	J	284	286	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	101	102	first strand
Strand 2	K	117	118	anti-parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	189	193	first strand
Strand 2	K	156	161	parallel
Strand 3	K	216	222	parallel
Strand 4	K	262	267	parallel
Strand 5	K	122	127	parallel
Strand 6	K	298	304	parallel
Strand 7	K	309	316	anti-parallel
Strand 8	K	324	330	anti-parallel
Strand 9	K	333	335	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	269	271	first strand
Strand 2	K	284	286	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SVY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SVY