Analysis of interatomic Contacts of Structural Units in PDB entry:
9SVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SVZ entry

There are 4 chains in PDB entry 9SVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7ASN 294
B
 ASN 7ASN 294
C
 ALA 1ALA 18
D
 ALA 1ALA 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9SVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
206 210Right-handed 310
Helix 2
AA2
A
213 217Right-handed 310
Helix 3
AA3
A
218 222Right-handed 310
Helix 4
AA4
B
206 210Right-handed 310
Helix 5
AA5
B
213 217Right-handed 310
Helix 6
AA6
B
218 222Right-handed 310
Helix 7
AA7
C
13 17Right-handed 310
Helix 8
AA8
D
13 17Right-handed 310
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There are 10 sheets in PDB entry 9SVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
19 30anti-parallel
Strand 3
A
35 46anti-parallel
Strand 4
A
51 62anti-parallel
Strand 5
A
229 236anti-parallel
Strand 6
A
98 103anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
76 90anti-parallel
Strand 3
A
165 172anti-parallel
Strand 4
A
154 158anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
76 90anti-parallel
Strand 3
A
243 261anti-parallel
Strand 4
A
266 286anti-parallel
Strand 5
A
291 293anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
112 119anti-parallel
Strand 3
A
141 150anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 183anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
19 30anti-parallel
Strand 3
B
35 46anti-parallel
Strand 4
B
51 62anti-parallel
Strand 5
B
229 236anti-parallel
Strand 6
B
98 103anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
76 90anti-parallel
Strand 3
B
165 172anti-parallel
Strand 4
B
154 159anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
76 90anti-parallel
Strand 3
B
243 261anti-parallel
Strand 4
B
266 286anti-parallel
Strand 5
B
291 293anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
112 119anti-parallel
Strand 3
B
141 150anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
182 183anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il