Analysis of interatomic Contacts of Structural Units in PDB entry:
9SW5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SW5 entry

There are 6 chains in PDB entry 9SW5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 11	ALA 657
B	MET 1	LEU 291
C	THR 2	GLU 185
F	VAL 2	HIS 448
E	LYS 4	LYS 304
D	ASP 5	GLU 140

There are 94 helices in PDB entry 9SW5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	39	Right-handed alpha
Helix 2	AA2	A	55	70	Right-handed alpha
Helix 3	AA3	A	80	95	Right-handed alpha
Helix 4	AA4	A	98	100	Right-handed 310
Helix 5	AA5	A	118	140	Right-handed alpha
Helix 6	AA6	A	160	173	Right-handed alpha
Helix 7	AA7	A	203	217	Right-handed alpha
Helix 8	AA8	A	258	264	Right-handed alpha
Helix 9	AA9	A	271	274	Right-handed 310
Helix 10	AB1	A	305	311	Right-handed alpha
Helix 11	AB2	A	342	346	Right-handed 310
Helix 12	AB3	A	360	368	Right-handed alpha
Helix 13	AB4	A	410	426	Right-handed alpha
Helix 14	AB5	A	444	457	Right-handed alpha
Helix 15	AB6	A	507	516	Right-handed alpha
Helix 16	AB7	A	546	550	Right-handed 310
Helix 17	AB8	A	553	575	Right-handed alpha
Helix 18	AB9	A	617	620	Right-handed 310
Helix 19	AC1	A	624	630	Right-handed alpha
Helix 20	AC2	A	641	652	Right-handed alpha
Helix 21	AC3	B	9	15	Right-handed alpha
Helix 22	AC4	B	15	30	Right-handed alpha
Helix 23	AC5	B	44	52	Right-handed alpha
Helix 24	AC6	B	52	70	Right-handed alpha
Helix 25	AC7	B	78	95	Right-handed alpha
Helix 26	AC8	B	96	107	Right-handed alpha
Helix 27	AC9	B	122	129	Right-handed alpha
Helix 28	AD1	B	130	138	Right-handed alpha
Helix 29	AD2	B	152	157	Right-handed alpha
Helix 30	AD3	B	158	163	Right-handed alpha
Helix 31	AD4	B	171	180	Right-handed alpha
Helix 32	AD5	B	196	198	Right-handed 310
Helix 33	AD6	B	199	204	Right-handed alpha
Helix 34	AD7	B	204	222	Right-handed alpha
Helix 35	AD8	B	231	249	Right-handed alpha
Helix 36	AD9	B	260	268	Right-handed alpha
Helix 37	AE1	B	271	276	Right-handed alpha
Helix 38	AE2	B	284	291	Right-handed alpha
Helix 39	AE3	C	12	16	Right-handed 310
Helix 40	AE4	C	17	27	Right-handed alpha
Helix 41	AE5	C	29	35	Right-handed 310
Helix 42	AE6	C	39	45	Right-handed alpha
Helix 43	AE7	C	46	50	Right-handed 310
Helix 44	AE8	C	54	65	Right-handed alpha
Helix 45	AE9	C	66	72	Right-handed alpha
Helix 46	AF1	C	73	79	Right-handed 310
Helix 47	AF2	C	83	89	Right-handed alpha
Helix 48	AF3	C	94	109	Right-handed alpha
Helix 49	AF4	C	113	127	Right-handed alpha
Helix 50	AF5	C	133	143	Right-handed alpha
Helix 51	AF6	C	155	170	Right-handed alpha
Helix 52	AF7	C	170	175	Right-handed alpha
Helix 53	AF8	F	40	45	Right-handed alpha
Helix 54	AF9	F	49	51	Right-handed 310
Helix 55	AG1	F	52	57	Right-handed alpha
Helix 56	AG2	F	58	61	Right-handed 310
Helix 57	AG3	F	64	81	Right-handed alpha
Helix 58	AG4	F	88	114	Right-handed alpha
Helix 59	AG5	F	115	120	Right-handed alpha
Helix 60	AG6	F	129	137	Right-handed alpha
Helix 61	AG7	F	137	160	Right-handed alpha
Helix 62	AG8	F	178	210	Right-handed alpha
Helix 63	AG9	F	210	215	Right-handed alpha
Helix 64	AH1	F	254	256	Right-handed 310
Helix 65	AH2	F	257	261	Right-handed alpha
Helix 66	AH3	F	290	298	Right-handed alpha
Helix 67	AH4	F	305	319	Right-handed alpha
Helix 68	AH5	F	327	347	Right-handed alpha
Helix 69	AH6	F	397	418	Right-handed alpha
Helix 70	AH7	F	425	438	Right-handed alpha
Helix 71	AH8	E	16	24	Right-handed alpha
Helix 72	AH9	E	28	35	Right-handed alpha
Helix 73	AI1	E	67	79	Right-handed alpha
Helix 74	AI2	E	87	92	Right-handed alpha
Helix 75	AI3	E	94	102	Right-handed 310
Helix 76	AI4	E	103	113	Right-handed alpha
Helix 77	AI5	E	139	143	Right-handed 310
Helix 78	AI6	E	156	169	Right-handed alpha
Helix 79	AI7	E	179	183	Right-handed 310
Helix 80	AI8	E	200	205	Right-handed alpha
Helix 81	AI9	E	212	217	Right-handed alpha
Helix 82	AJ1	E	231	236	Right-handed alpha
Helix 83	AJ2	E	252	265	Right-handed alpha
Helix 84	AJ3	E	266	270	Right-handed 310
Helix 85	AJ4	E	274	281	Right-handed alpha
Helix 86	AJ5	E	284	290	Right-handed alpha
Helix 87	AJ6	E	293	297	Right-handed 310
Helix 88	AJ7	D	16	27	Right-handed alpha
Helix 89	AJ8	D	42	46	Right-handed 310
Helix 90	AJ9	D	47	57	Right-handed alpha
Helix 91	AK1	D	76	95	Right-handed alpha
Helix 92	AK2	D	98	100	Right-handed 310
Helix 93	AK3	D	112	130	Right-handed alpha
Helix 94	AK4	D	133	140	Right-handed alpha

There are 23 sheets in PDB entry 9SW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	14	19	parallel
Strand 3	A	73	78	parallel
Strand 4	A	102	106	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	149	first strand
Strand 2	A	576	578	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	224	first strand
Strand 2	A	176	181	parallel
Strand 3	A	153	157	parallel
Strand 4	A	331	334	parallel
Strand 5	A	542	544	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	201	202	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	232	first strand
Strand 2	A	238	244	anti-parallel
Strand 3	A	323	329	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	269	first strand
Strand 2	A	278	280	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	295	296	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	502	503	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	359	first strand
Strand 2	A	495	500	parallel
Strand 3	A	388	395	parallel
Strand 4	A	430	435	parallel
Strand 5	A	459	462	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	470	first strand
Strand 2	A	476	482	anti-parallel
Strand 3	A	487	493	anti-parallel
Strand 4	C	10	11	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	586	first strand
Strand 2	A	635	637	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	609	first strand
Strand 2	A	612	615	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	2	5	parallel
Strand 3	B	74	76	parallel
Strand 4	B	119	121	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	184	first strand
Strand 2	B	146	150	parallel
Strand 3	B	226	229	parallel
Strand 4	B	257	259	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	183	184	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	16	21	anti-parallel
Strand 3	F	29	35	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	233	first strand
Strand 2	F	223	229	anti-parallel
Strand 3	F	239	243	anti-parallel
Strand 4	F	249	253	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	233	first strand
Strand 2	F	223	229	anti-parallel
Strand 3	F	287	289	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	262	265	first strand
Strand 2	F	274	277	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	365	373	first strand
Strand 2	F	376	384	anti-parallel
Strand 3	F	390	396	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	40	first strand
Strand 2	E	5	11	parallel
Strand 3	E	55	61	parallel
Strand 4	E	80	86	parallel
Strand 5	E	148	150	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	133	138	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	8	13	parallel
Strand 3	D	61	66	parallel
Strand 4	D	102	106	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SW5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SW5