Analysis of interatomic Contacts of Structural Units in PDB entry:
9SWJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SWJ entry

There are 4 chains in PDB entry 9SWJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 42	LEU 346
D	GLU 44	ILE 463
A	SER 42	LEU 346
B	GLU 44	ALA 453

There are108 helices in PDB entry 9SWJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	42	51	Right-handed 310
Helix 2	AA2	C	65	79	Right-handed alpha
Helix 3	AA3	C	103	112	Right-handed alpha
Helix 4	AA4	C	121	123	Right-handed 310
Helix 5	AA5	C	124	135	Right-handed alpha
Helix 6	AA6	C	148	161	Right-handed alpha
Helix 7	AA7	C	187	191	Right-handed 310
Helix 8	AA8	C	202	216	Right-handed alpha
Helix 9	AA9	C	235	245	Right-handed alpha
Helix 10	AB1	C	261	274	Right-handed alpha
Helix 11	AB2	C	311	321	Right-handed alpha
Helix 12	AB3	C	331	344	Right-handed alpha
Helix 13	AB4	D	56	67	Right-handed alpha
Helix 14	AB5	D	79	90	Right-handed alpha
Helix 15	AB6	D	124	133	Right-handed alpha
Helix 16	AB7	D	191	199	Right-handed alpha
Helix 17	AB8	D	200	203	Right-handed 310
Helix 18	AB9	D	215	227	Right-handed alpha
Helix 19	AC1	D	232	250	Right-handed alpha
Helix 20	AC2	D	279	283	Right-handed 310
Helix 21	AC3	D	285	291	Right-handed alpha
Helix 22	AC4	D	298	307	Right-handed alpha
Helix 23	AC5	D	324	338	Right-handed alpha
Helix 24	AC6	D	353	367	Right-handed alpha
Helix 25	AC7	D	383	399	Right-handed alpha
Helix 26	AC8	D	413	424	Right-handed alpha
Helix 27	AC9	D	432	454	Right-handed alpha
Helix 28	AD1	A	42	51	Right-handed 310
Helix 29	AD2	A	65	79	Right-handed alpha
Helix 30	AD3	A	103	112	Right-handed alpha
Helix 31	AD4	A	121	123	Right-handed 310
Helix 32	AD5	A	124	135	Right-handed alpha
Helix 33	AD6	A	148	161	Right-handed alpha
Helix 34	AD7	A	187	191	Right-handed 310
Helix 35	AD8	A	202	216	Right-handed alpha
Helix 36	AD9	A	235	245	Right-handed alpha
Helix 37	AE1	A	261	274	Right-handed alpha
Helix 38	AE2	A	311	321	Right-handed alpha
Helix 39	AE3	A	331	344	Right-handed alpha
Helix 40	AE4	B	56	67	Right-handed alpha
Helix 41	AE5	B	79	90	Right-handed alpha
Helix 42	AE6	B	124	133	Right-handed alpha
Helix 43	AE7	B	191	199	Right-handed alpha
Helix 44	AE8	B	200	203	Right-handed 310
Helix 45	AE9	B	215	227	Right-handed alpha
Helix 46	AF1	B	232	250	Right-handed alpha
Helix 47	AF2	B	279	283	Right-handed 310
Helix 48	AF3	B	285	291	Right-handed alpha
Helix 49	AF4	B	298	307	Right-handed alpha
Helix 50	AF5	B	324	338	Right-handed alpha
Helix 51	AF6	B	353	367	Right-handed alpha
Helix 52	AF7	B	383	399	Right-handed alpha
Helix 53	AF8	B	413	424	Right-handed alpha
Helix 54	AF9	B	432	454	Right-handed alpha
Helix 55	AG1	E	42	51	Right-handed 310
Helix 56	AG2	E	65	79	Right-handed alpha
Helix 57	AG3	E	103	112	Right-handed alpha
Helix 58	AG4	E	121	123	Right-handed 310
Helix 59	AG5	E	124	135	Right-handed alpha
Helix 60	AG6	E	148	161	Right-handed alpha
Helix 61	AG7	E	187	191	Right-handed 310
Helix 62	AG8	E	202	216	Right-handed alpha
Helix 63	AG9	E	235	245	Right-handed alpha
Helix 64	AH1	E	261	274	Right-handed alpha
Helix 65	AH2	E	311	321	Right-handed alpha
Helix 66	AH3	E	331	344	Right-handed alpha
Helix 67	AH4	F	56	67	Right-handed alpha
Helix 68	AH5	F	79	90	Right-handed alpha
Helix 69	AH6	F	124	133	Right-handed alpha
Helix 70	AH7	F	191	199	Right-handed alpha
Helix 71	AH8	F	200	203	Right-handed 310
Helix 72	AH9	F	215	227	Right-handed alpha
Helix 73	AI1	F	232	250	Right-handed alpha
Helix 74	AI2	F	279	283	Right-handed 310
Helix 75	AI3	F	285	291	Right-handed alpha
Helix 76	AI4	F	298	307	Right-handed alpha
Helix 77	AI5	F	324	338	Right-handed alpha
Helix 78	AI6	F	353	367	Right-handed alpha
Helix 79	AI7	F	383	399	Right-handed alpha
Helix 80	AI8	F	413	424	Right-handed alpha
Helix 81	AI9	F	432	454	Right-handed alpha
Helix 82	AJ1	G	42	51	Right-handed 310
Helix 83	AJ2	G	65	79	Right-handed alpha
Helix 84	AJ3	G	103	112	Right-handed alpha
Helix 85	AJ4	G	121	123	Right-handed 310
Helix 86	AJ5	G	124	135	Right-handed alpha
Helix 87	AJ6	G	148	161	Right-handed alpha
Helix 88	AJ7	G	187	191	Right-handed 310
Helix 89	AJ8	G	202	216	Right-handed alpha
Helix 90	AJ9	G	235	245	Right-handed alpha
Helix 91	AK1	G	261	274	Right-handed alpha
Helix 92	AK2	G	311	321	Right-handed alpha
Helix 93	AK3	G	331	344	Right-handed alpha
Helix 94	AK4	H	56	67	Right-handed alpha
Helix 95	AK5	H	79	90	Right-handed alpha
Helix 96	AK6	H	124	133	Right-handed alpha
Helix 97	AK7	H	191	199	Right-handed alpha
Helix 98	AK8	H	200	203	Right-handed 310
Helix 99	AK9	H	215	227	Right-handed alpha
Helix 100	AL1	H	232	250	Right-handed alpha
Helix 101	AL2	H	279	283	Right-handed 310
Helix 102	AL3	H	285	291	Right-handed alpha
Helix 103	AL4	H	298	307	Right-handed alpha
Helix 104	AL5	H	324	338	Right-handed alpha
Helix 105	AL6	H	353	367	Right-handed alpha
Helix 106	AL7	H	383	399	Right-handed alpha
Helix 107	AL8	H	413	424	Right-handed alpha
Helix 108	AL9	H	432	454	Right-handed alpha

There are 34 sheets in PDB entry 9SWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	98	101	anti-parallel
Strand 3	C	82	86	parallel
Strand 4	C	58	61	parallel
Strand 5	C	115	118	parallel
Strand 6	C	139	142	parallel
Strand 7	C	166	168	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	184	first strand
Strand 2	C	174	177	anti-parallel
Strand 3	C	220	225	anti-parallel
Strand 4	C	193	200	parallel
Strand 5	C	251	257	parallel
Strand 6	C	282	287	parallel
Strand 7	C	324	325	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	77	first strand
Strand 2	D	155	159	anti-parallel
Strand 3	D	95	99	anti-parallel
Strand 4	D	119	122	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	138	141	anti-parallel
Strand 3	D	151	152	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	207	first strand
Strand 2	D	179	185	anti-parallel
Strand 3	D	165	174	anti-parallel
Strand 4	D	252	263	anti-parallel
Strand 5	D	266	270	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	207	first strand
Strand 2	D	179	185	anti-parallel
Strand 3	D	165	174	anti-parallel
Strand 4	D	252	263	anti-parallel
Strand 5	D	274	277	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	313	first strand
Strand 2	D	344	347	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	322	first strand
Strand 2	D	372	377	parallel
Strand 3	D	407	408	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	460	first strand
Strand 2	F	456	460	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	98	101	anti-parallel
Strand 3	A	82	86	parallel
Strand 4	A	58	61	parallel
Strand 5	A	115	118	parallel
Strand 6	A	139	142	parallel
Strand 7	A	166	168	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	174	177	anti-parallel
Strand 3	A	220	225	anti-parallel
Strand 4	A	193	200	parallel
Strand 5	A	251	257	parallel
Strand 6	A	282	287	parallel
Strand 7	A	324	325	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	77	first strand
Strand 2	B	155	159	anti-parallel
Strand 3	B	95	99	anti-parallel
Strand 4	B	119	122	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	138	141	anti-parallel
Strand 3	B	151	152	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	207	first strand
Strand 2	B	179	185	anti-parallel
Strand 3	B	165	174	anti-parallel
Strand 4	B	252	263	anti-parallel
Strand 5	B	266	270	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	207	first strand
Strand 2	B	179	185	anti-parallel
Strand 3	B	165	174	anti-parallel
Strand 4	B	252	263	anti-parallel
Strand 5	B	274	277	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	313	first strand
Strand 2	B	344	347	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	322	first strand
Strand 2	B	372	377	parallel
Strand 3	B	407	408	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	460	first strand
Strand 2	H	456	460	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	98	101	anti-parallel
Strand 3	E	82	86	parallel
Strand 4	E	58	61	parallel
Strand 5	E	115	118	parallel
Strand 6	E	139	142	parallel
Strand 7	E	166	168	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	184	first strand
Strand 2	E	174	177	anti-parallel
Strand 3	E	220	225	anti-parallel
Strand 4	E	193	200	parallel
Strand 5	E	251	257	parallel
Strand 6	E	282	287	parallel
Strand 7	E	324	325	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	77	first strand
Strand 2	F	155	159	anti-parallel
Strand 3	F	95	99	anti-parallel
Strand 4	F	119	122	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	111	first strand
Strand 2	F	138	141	anti-parallel
Strand 3	F	151	152	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	207	first strand
Strand 2	F	179	185	anti-parallel
Strand 3	F	165	174	anti-parallel
Strand 4	F	252	263	anti-parallel
Strand 5	F	266	270	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	207	first strand
Strand 2	F	179	185	anti-parallel
Strand 3	F	165	174	anti-parallel
Strand 4	F	252	263	anti-parallel
Strand 5	F	274	277	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	310	313	first strand
Strand 2	F	344	347	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	318	322	first strand
Strand 2	F	372	377	parallel
Strand 3	F	407	408	parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	95	first strand
Strand 2	G	98	101	anti-parallel
Strand 3	G	82	86	parallel
Strand 4	G	58	61	parallel
Strand 5	G	115	118	parallel
Strand 6	G	139	142	parallel
Strand 7	G	166	168	parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	184	first strand
Strand 2	G	174	177	anti-parallel
Strand 3	G	220	225	anti-parallel
Strand 4	G	193	200	parallel
Strand 5	G	251	257	parallel
Strand 6	G	282	287	parallel
Strand 7	G	324	325	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	74	77	first strand
Strand 2	H	155	159	anti-parallel
Strand 3	H	95	99	anti-parallel
Strand 4	H	119	122	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	110	111	first strand
Strand 2	H	138	141	anti-parallel
Strand 3	H	151	152	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	204	207	first strand
Strand 2	H	179	185	anti-parallel
Strand 3	H	165	174	anti-parallel
Strand 4	H	252	263	anti-parallel
Strand 5	H	266	270	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	204	207	first strand
Strand 2	H	179	185	anti-parallel
Strand 3	H	165	174	anti-parallel
Strand 4	H	252	263	anti-parallel
Strand 5	H	274	277	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	310	313	first strand
Strand 2	H	344	347	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	318	322	first strand
Strand 2	H	372	377	parallel
Strand 3	H	407	408	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SWJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SWJ