Analysis of interatomic Contacts of Structural Units in PDB entry:
9SWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SWM entry

There are 2 chains in PDB entry 9SWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4GLU 336
B
 SER 4GLU 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9SWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 34Right-handed alpha
Helix 2
AA2
A
45 70Right-handed alpha
Helix 3
AA3
A
72 77Right-handed alpha
Helix 4
AA4
A
81 90Right-handed alpha
Helix 5
AA5
A
91 106Right-handed alpha
Helix 6
AA6
A
107 109Right-handed 310
Helix 7
AA7
A
116 134Right-handed alpha
Helix 8
AA8
A
140 149Right-handed alpha
Helix 9
AA9
A
156 167Right-handed alpha
Helix 10
AB1
A
167 172Right-handed alpha
Helix 11
AB2
A
174 183Right-handed alpha
Helix 12
AB3
A
184 190Right-handed 310
Helix 13
AB4
A
211 216Right-handed alpha
Helix 14
AB5
A
263 273Right-handed alpha
Helix 15
AB6
A
280 300Right-handed alpha
Helix 16
AB7
A
324 335Right-handed alpha
Helix 17
AB8
B
16 33Right-handed alpha
Helix 18
AB9
B
42 44Right-handed 310
Helix 19
AC1
B
45 70Right-handed alpha
Helix 20
AC2
B
72 77Right-handed alpha
Helix 21
AC3
B
80 90Right-handed alpha
Helix 22
AC4
B
92 106Right-handed alpha
Helix 23
AC5
B
116 134Right-handed alpha
Helix 24
AC6
B
140 149Right-handed alpha
Helix 25
AC7
B
156 167Right-handed alpha
Helix 26
AC8
B
167 183Right-handed alpha
Helix 27
AC9
B
184 189Right-handed 310
Helix 28
AD1
B
211 215Right-handed 310
Helix 29
AD2
B
263 274Right-handed alpha
Helix 30
AD3
B
280 300Right-handed alpha
Helix 31
AD4
B
324 335Right-handed alpha
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There are 2 sheets in PDB entry 9SWM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 224first strand
Strand 2
A
243 249anti-parallel
Strand 3
A
252 261anti-parallel
Strand 4
A
198 203parallel
Strand 5
A
309 314parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 225first strand
Strand 2
B
242 248anti-parallel
Strand 3
B
253 261anti-parallel
Strand 4
B
198 203parallel
Strand 5
B
309 314parallel
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