Analysis of interatomic Contacts of Structural Units in PDB entry:
9SWN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SWN entry

There are 7 chains in PDB entry 9SWN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PRO 2	LEU 181
E	ILE 2	GLN 158
G	VAL 6	LEU 575
F	THR 12	VAL 140
D	ASN 206	VAL 875
B	G 116	C 1078
A	MET 1	ASN 884

There are120 helices in PDB entry 9SWN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	6	10	Right-handed 310
Helix 2	AA2	C	21	29	Right-handed alpha
Helix 3	AA3	C	46	52	Right-handed alpha
Helix 4	AA4	C	53	55	Right-handed 310
Helix 5	AA5	C	56	62	Right-handed alpha
Helix 6	AA6	C	96	108	Right-handed alpha
Helix 7	AA7	C	132	138	Right-handed alpha
Helix 8	AA8	C	142	146	Right-handed 310
Helix 9	AA9	C	176	180	Right-handed 310
Helix 10	AB1	E	18	29	Right-handed alpha
Helix 11	AB2	E	29	35	Right-handed alpha
Helix 12	AB3	E	36	40	Right-handed 310
Helix 13	AB4	E	54	69	Right-handed alpha
Helix 14	AB5	E	70	74	Right-handed 310
Helix 15	AB6	E	87	103	Right-handed alpha
Helix 16	AB7	G	7	26	Right-handed alpha
Helix 17	AB8	G	28	32	Right-handed 310
Helix 18	AB9	G	33	68	Right-handed alpha
Helix 19	AC1	G	77	89	Right-handed alpha
Helix 20	AC2	G	90	106	Right-handed alpha
Helix 21	AC3	G	109	144	Right-handed alpha
Helix 22	AC4	G	153	160	Right-handed alpha
Helix 23	AC5	G	162	168	Right-handed alpha
Helix 24	AC6	G	183	208	Right-handed alpha
Helix 25	AC7	G	217	220	Right-handed 310
Helix 26	AC8	G	221	234	Right-handed alpha
Helix 27	AC9	G	239	252	Right-handed alpha
Helix 28	AD1	G	254	267	Right-handed alpha
Helix 29	AD2	G	272	284	Right-handed alpha
Helix 30	AD3	G	288	303	Right-handed alpha
Helix 31	AD4	G	309	330	Right-handed alpha
Helix 32	AD5	G	331	334	Right-handed 310
Helix 33	AD6	G	335	355	Right-handed alpha
Helix 34	AD7	G	360	377	Right-handed alpha
Helix 35	AD8	G	384	390	Right-handed alpha
Helix 36	AD9	G	392	396	Right-handed 310
Helix 37	AE1	G	397	418	Right-handed alpha
Helix 38	AE2	G	418	423	Right-handed alpha
Helix 39	AE3	G	424	426	Right-handed 310
Helix 40	AE4	G	430	446	Right-handed alpha
Helix 41	AE5	G	446	456	Right-handed alpha
Helix 42	AE6	G	456	473	Right-handed alpha
Helix 43	AE7	G	492	498	Right-handed alpha
Helix 44	AE8	G	501	505	Right-handed 310
Helix 45	AE9	G	521	526	Right-handed alpha
Helix 46	AF1	G	537	558	Right-handed alpha
Helix 47	AF2	F	25	30	Right-handed alpha
Helix 48	AF3	F	40	53	Right-handed alpha
Helix 49	AF4	F	54	59	Right-handed 310
Helix 50	AF5	F	71	85	Right-handed alpha
Helix 51	AF6	F	118	122	Right-handed 310
Helix 52	AF7	D	227	231	Right-handed 310
Helix 53	AF8	D	242	247	Right-handed alpha
Helix 54	AF9	D	271	277	Right-handed 310
Helix 55	AG1	D	307	318	Right-handed alpha
Helix 56	AG2	D	324	329	Right-handed alpha
Helix 57	AG3	D	374	384	Right-handed alpha
Helix 58	AG4	D	407	414	Right-handed alpha
Helix 59	AG5	D	422	432	Right-handed alpha
Helix 60	AG6	D	436	440	Right-handed 310
Helix 61	AG7	D	453	456	Right-handed 310
Helix 62	AG8	D	471	481	Right-handed alpha
Helix 63	AG9	D	483	496	Right-handed alpha
Helix 64	AH1	D	496	503	Right-handed alpha
Helix 65	AH2	D	509	524	Right-handed alpha
Helix 66	AH3	D	564	573	Right-handed alpha
Helix 67	AH4	D	582	593	Right-handed alpha
Helix 68	AH5	D	605	614	Right-handed alpha
Helix 69	AH6	D	614	626	Right-handed alpha
Helix 70	AH7	D	628	632	Right-handed 310
Helix 71	AH8	D	660	675	Right-handed alpha
Helix 72	AH9	D	693	697	Right-handed 310
Helix 73	AI1	D	702	721	Right-handed alpha
Helix 74	AI2	D	746	750	Right-handed 310
Helix 75	AI3	D	785	787	Right-handed 310
Helix 76	AI4	D	788	798	Right-handed alpha
Helix 77	AI5	D	816	818	Right-handed 310
Helix 78	AI6	D	844	850	Right-handed alpha
Helix 79	AI7	A	4	11	Right-handed alpha
Helix 80	AI8	A	20	29	Right-handed alpha
Helix 81	AI9	A	33	40	Right-handed alpha
Helix 82	AJ1	A	60	75	Right-handed alpha
Helix 83	AJ2	A	80	84	Right-handed 310
Helix 84	AJ3	A	105	111	Right-handed alpha
Helix 85	AJ4	A	112	123	Right-handed alpha
Helix 86	AJ5	A	123	133	Right-handed alpha
Helix 87	AJ6	A	150	154	Right-handed 310
Helix 88	AJ7	A	159	164	Right-handed alpha
Helix 89	AJ8	A	172	177	Right-handed alpha
Helix 90	AJ9	A	178	180	Right-handed 310
Helix 91	AK1	A	185	188	Right-handed 310
Helix 92	AK2	A	200	204	Right-handed 310
Helix 93	AK3	A	213	222	Right-handed alpha
Helix 94	AK4	A	233	249	Right-handed alpha
Helix 95	AK5	A	252	261	Right-handed alpha
Helix 96	AK6	A	272	277	Right-handed 310
Helix 97	AK7	A	279	295	Right-handed alpha
Helix 98	AK8	A	302	318	Right-handed alpha
Helix 99	AK9	A	326	332	Right-handed alpha
Helix 100	AL1	A	339	343	Right-handed 310
Helix 101	AL2	A	350	371	Right-handed alpha
Helix 102	AL3	A	371	380	Right-handed alpha
Helix 103	AL4	A	397	415	Right-handed alpha
Helix 104	AL5	A	460	474	Right-handed alpha
Helix 105	AL6	A	474	489	Right-handed alpha
Helix 106	AL7	A	498	500	Right-handed 310
Helix 107	AL8	A	501	517	Right-handed alpha
Helix 108	AL9	A	533	538	Right-handed alpha
Helix 109	AM1	A	539	550	Right-handed alpha
Helix 110	AM2	A	603	614	Right-handed alpha
Helix 111	AM3	A	636	650	Right-handed alpha
Helix 112	AM4	A	651	656	Right-handed 310
Helix 113	AM5	A	678	692	Right-handed alpha
Helix 114	AM6	A	736	739	Right-handed 310
Helix 115	AM7	A	748	764	Right-handed alpha
Helix 116	AM8	A	775	798	Right-handed alpha
Helix 117	AM9	A	804	824	Right-handed alpha
Helix 118	AN1	A	826	830	Right-handed 310
Helix 119	AN2	A	832	852	Right-handed alpha
Helix 120	AN3	A	858	884	Right-handed alpha

There are 19 sheets in PDB entry 9SWN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	42	first strand
Strand 2	C	119	131	anti-parallel
Strand 3	C	151	162	anti-parallel
Strand 4	C	90	95	parallel
Strand 5	C	79	85	anti-parallel
Strand 6	C	66	76	anti-parallel
Strand 7	C	119	131	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	4	7	anti-parallel
Strand 3	E	110	123	anti-parallel
Strand 4	E	130	143	anti-parallel
Strand 5	E	78	84	anti-parallel
Strand 6	E	44	48	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	4	7	anti-parallel
Strand 3	E	110	123	anti-parallel
Strand 4	E	156	157	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	147	first strand
Strand 2	G	175	176	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	565	567	first strand
Strand 2	G	572	574	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	17	first strand
Strand 2	F	90	104	anti-parallel
Strand 3	F	124	139	anti-parallel
Strand 4	F	62	68	anti-parallel
Strand 5	F	32	34	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	389	393	anti-parallel
Strand 3	D	294	300	anti-parallel
Strand 4	D	365	370	anti-parallel
Strand 5	D	350	362	anti-parallel
Strand 6	D	334	341	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	255	first strand
Strand 2	D	258	264	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	451	first strand
Strand 2	D	542	550	anti-parallel
Strand 3	D	555	561	anti-parallel
Strand 4	D	398	404	anti-parallel
Strand 5	D	285	289	anti-parallel
Strand 6	D	578	580	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	730	732	first strand
Strand 2	D	760	769	parallel
Strand 3	D	866	872	anti-parallel
Strand 4	D	854	858	anti-parallel
Strand 5	D	779	783	anti-parallel
Strand 6	D	820	830	anti-parallel
Strand 7	D	835	843	anti-parallel
Strand 8	D	760	769	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	41	45	anti-parallel
Strand 3	A	134	139	anti-parallel
Strand 4	A	144	148	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	98	99	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	324	325	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	385	first strand
Strand 2	A	392	396	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	418	first strand
Strand 2	A	622	626	anti-parallel
Strand 3	A	615	619	anti-parallel
Strand 4	A	434	442	parallel
Strand 5	A	449	455	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	667	first strand
Strand 2	A	671	676	anti-parallel
Strand 3	A	525	532	anti-parallel
Strand 4	A	699	700	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	578	first strand
Strand 2	A	556	566	anti-parallel
Strand 3	A	588	591	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	578	first strand
Strand 2	A	556	566	anti-parallel
Strand 3	A	596	600	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	719	first strand
Strand 2	A	723	726	anti-parallel
Strand 3	A	731	734	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SWN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SWN