Analysis of interatomic Contacts of Structural Units in PDB entry:
9SWR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SWR entry

There are 6 chains in PDB entry 9SWR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	LYS 338
B	SER 4	LYS 338
C	SER 5	GLU 337
D	HIS 3	LYS 338
E	SER 4	LYS 338
F	SER 5	LYS 338

There are 83 helices in PDB entry 9SWR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	37	Right-handed alpha
Helix 2	AA2	A	39	70	Right-handed alpha
Helix 3	AA3	A	71	73	Right-handed 310
Helix 4	AA4	A	80	90	Right-handed alpha
Helix 5	AA5	A	91	109	Right-handed alpha
Helix 6	AA6	A	116	134	Right-handed alpha
Helix 7	AA7	A	140	151	Right-handed alpha
Helix 8	AA8	A	154	167	Right-handed alpha
Helix 9	AA9	A	167	172	Right-handed alpha
Helix 10	AB1	A	174	187	Right-handed alpha
Helix 11	AB2	A	211	215	Right-handed 310
Helix 12	AB3	A	263	274	Right-handed alpha
Helix 13	AB4	A	280	300	Right-handed alpha
Helix 14	AB5	A	302	306	Right-handed 310
Helix 15	AB6	A	324	337	Right-handed alpha
Helix 16	AB7	B	16	37	Right-handed alpha
Helix 17	AB8	B	39	70	Right-handed alpha
Helix 18	AB9	B	71	73	Right-handed 310
Helix 19	AC1	B	80	90	Right-handed alpha
Helix 20	AC2	B	91	109	Right-handed alpha
Helix 21	AC3	B	116	134	Right-handed alpha
Helix 22	AC4	B	140	151	Right-handed alpha
Helix 23	AC5	B	154	167	Right-handed alpha
Helix 24	AC6	B	167	172	Right-handed alpha
Helix 25	AC7	B	174	186	Right-handed alpha
Helix 26	AC8	B	189	193	Right-handed 310
Helix 27	AC9	B	263	273	Right-handed alpha
Helix 28	AD1	B	280	300	Right-handed alpha
Helix 29	AD2	B	302	306	Right-handed 310
Helix 30	AD3	B	326	337	Right-handed alpha
Helix 31	AD4	C	16	37	Right-handed alpha
Helix 32	AD5	C	39	70	Right-handed alpha
Helix 33	AD6	C	71	73	Right-handed 310
Helix 34	AD7	C	80	89	Right-handed alpha
Helix 35	AD8	C	91	109	Right-handed alpha
Helix 36	AD9	C	116	134	Right-handed alpha
Helix 37	AE1	C	140	152	Right-handed alpha
Helix 38	AE2	C	154	167	Right-handed alpha
Helix 39	AE3	C	167	172	Right-handed alpha
Helix 40	AE4	C	174	186	Right-handed alpha
Helix 41	AE5	C	263	272	Right-handed alpha
Helix 42	AE6	C	280	302	Right-handed alpha
Helix 43	AE7	C	324	337	Right-handed alpha
Helix 44	AE8	D	16	37	Right-handed alpha
Helix 45	AE9	D	39	70	Right-handed alpha
Helix 46	AF1	D	71	73	Right-handed 310
Helix 47	AF2	D	80	90	Right-handed alpha
Helix 48	AF3	D	91	109	Right-handed alpha
Helix 49	AF4	D	116	134	Right-handed alpha
Helix 50	AF5	D	140	151	Right-handed alpha
Helix 51	AF6	D	154	172	Right-handed alpha
Helix 52	AF7	D	174	186	Right-handed alpha
Helix 53	AF8	D	263	274	Right-handed alpha
Helix 54	AF9	D	280	300	Right-handed alpha
Helix 55	AG1	D	302	306	Right-handed 310
Helix 56	AG2	D	325	338	Right-handed alpha
Helix 57	AG3	E	16	37	Right-handed alpha
Helix 58	AG4	E	39	70	Right-handed alpha
Helix 59	AG5	E	71	73	Right-handed 310
Helix 60	AG6	E	80	90	Right-handed alpha
Helix 61	AG7	E	91	108	Right-handed alpha
Helix 62	AG8	E	117	134	Right-handed alpha
Helix 63	AG9	E	140	151	Right-handed alpha
Helix 64	AH1	E	154	167	Right-handed alpha
Helix 65	AH2	E	167	172	Right-handed alpha
Helix 66	AH3	E	174	186	Right-handed alpha
Helix 67	AH4	E	262	272	Right-handed alpha
Helix 68	AH5	E	280	300	Right-handed alpha
Helix 69	AH6	E	302	306	Right-handed 310
Helix 70	AH7	E	324	337	Right-handed alpha
Helix 71	AH8	F	16	37	Right-handed alpha
Helix 72	AH9	F	39	70	Right-handed alpha
Helix 73	AI1	F	71	73	Right-handed 310
Helix 74	AI2	F	80	90	Right-handed alpha
Helix 75	AI3	F	91	109	Right-handed alpha
Helix 76	AI4	F	117	134	Right-handed alpha
Helix 77	AI5	F	140	151	Right-handed alpha
Helix 78	AI6	F	154	172	Right-handed alpha
Helix 79	AI7	F	174	186	Right-handed alpha
Helix 80	AI8	F	262	272	Right-handed alpha
Helix 81	AI9	F	280	300	Right-handed alpha
Helix 82	AJ1	F	302	306	Right-handed 310
Helix 83	AJ2	F	324	338	Right-handed alpha

There are 7 sheets in PDB entry 9SWR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	224	first strand
Strand 2	A	243	248	anti-parallel
Strand 3	A	253	261	anti-parallel
Strand 4	A	198	203	parallel
Strand 5	A	309	314	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	224	first strand
Strand 2	B	243	249	anti-parallel
Strand 3	B	252	261	anti-parallel
Strand 4	B	198	203	parallel
Strand 5	B	309	314	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	224	first strand
Strand 2	C	243	247	anti-parallel
Strand 3	C	256	261	anti-parallel
Strand 4	C	198	203	parallel
Strand 5	C	309	314	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	225	first strand
Strand 2	D	242	249	anti-parallel
Strand 3	D	252	261	anti-parallel
Strand 4	D	194	203	parallel
Strand 5	D	309	314	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	225	first strand
Strand 2	E	242	246	anti-parallel
Strand 3	E	256	261	anti-parallel
Strand 4	E	194	203	parallel
Strand 5	E	309	314	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	198	203	parallel
Strand 3	F	309	314	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	219	224	first strand
Strand 2	F	243	247	anti-parallel
Strand 3	F	255	257	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SWR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SWR