Analysis of interatomic Contacts of Structural Units in PDB entry:
9SWT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SWT entry

There are 2 chains in PDB entry 9SWT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 333GLY 742
B
 LYS 333VAL 744
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9SWT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
334 338Right-handed 310
Helix 2
AA2
A
344 357Right-handed alpha
Helix 3
AA3
A
420 424Right-handed 310
Helix 4
AA4
A
440 446Right-handed alpha
Helix 5
AA5
A
447 470Right-handed alpha
Helix 6
AA6
A
474 495Right-handed alpha
Helix 7
AA7
A
498 506Right-handed alpha
Helix 8
AA8
A
520 526Right-handed alpha
Helix 9
AA9
A
541 548Right-handed alpha
Helix 10
AB1
A
551 557Right-handed alpha
Helix 11
AB2
A
567 577Right-handed alpha
Helix 12
AB3
A
598 609Right-handed alpha
Helix 13
AB4
A
609 621Right-handed alpha
Helix 14
AB5
A
648 659Right-handed alpha
Helix 15
AB6
A
663 669Right-handed alpha
Helix 16
AB7
A
681 694Right-handed alpha
Helix 17
AB8
A
697 715Right-handed alpha
Helix 18
AB9
A
721 738Right-handed alpha
Helix 19
AC1
A
739 741Right-handed 310
Helix 20
AC2
B
334 338Right-handed 310
Helix 21
AC3
B
344 357Right-handed alpha
Helix 22
AC4
B
389 393Right-handed 310
Helix 23
AC5
B
420 424Right-handed 310
Helix 24
AC6
B
440 446Right-handed alpha
Helix 25
AC7
B
447 470Right-handed alpha
Helix 26
AC8
B
474 495Right-handed alpha
Helix 27
AC9
B
498 506Right-handed alpha
Helix 28
AD1
B
520 526Right-handed alpha
Helix 29
AD2
B
541 548Right-handed alpha
Helix 30
AD3
B
551 557Right-handed alpha
Helix 31
AD4
B
567 577Right-handed alpha
Helix 32
AD5
B
598 609Right-handed alpha
Helix 33
AD6
B
609 621Right-handed alpha
Helix 34
AD7
B
648 659Right-handed alpha
Helix 35
AD8
B
663 669Right-handed alpha
Helix 36
AD9
B
681 694Right-handed alpha
Helix 37
AE1
B
697 715Right-handed alpha
Helix 38
AE2
B
721 738Right-handed alpha
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There are 6 sheets in PDB entry 9SWT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 370first strand
Strand 2
A
376 381anti-parallel
Strand 3
A
427 432anti-parallel
Strand 4
A
399 405parallel
Strand 5
A
408 413anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 519first strand
Strand 2
A
507 510anti-parallel
Strand 3
A
561 564anti-parallel
Strand 4
A
533 538parallel
Strand 5
A
582 586parallel
Strand 6
A
578 579anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 629first strand
Strand 2
A
673 677parallel
Strand 3
A
638 642anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 369first strand
Strand 2
B
376 381anti-parallel
Strand 3
B
427 432anti-parallel
Strand 4
B
399 405parallel
Strand 5
B
408 413anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
517 519first strand
Strand 2
B
507 510anti-parallel
Strand 3
B
562 564anti-parallel
Strand 4
B
533 538parallel
Strand 5
B
582 586parallel
Strand 6
B
578 579anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
626 629first strand
Strand 2
B
673 677parallel
Strand 3
B
638 642anti-parallel
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