Analysis of interatomic Contacts of Structural Units in PDB entry:
9SX3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SX3 entry

There are 2 chains in PDB entry 9SX3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 333ASP 596
B
 LYS 333GLU 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9SX3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
334 338Right-handed 310
Helix 2
AA2
A
344 357Right-handed alpha
Helix 3
AA3
A
414 419Right-handed alpha
Helix 4
AA4
A
420 424Right-handed 310
Helix 5
AA5
A
440 446Right-handed alpha
Helix 6
AA6
A
447 470Right-handed alpha
Helix 7
AA7
A
474 495Right-handed alpha
Helix 8
AA8
A
498 503Right-handed alpha
Helix 9
AA9
A
520 528Right-handed alpha
Helix 10
AB1
A
543 546Right-handed 310
Helix 11
AB2
A
547 557Right-handed alpha
Helix 12
AB3
A
566 577Right-handed alpha
Helix 13
AB4
B
334 338Right-handed 310
Helix 14
AB5
B
344 357Right-handed alpha
Helix 15
AB6
B
414 419Right-handed alpha
Helix 16
AB7
B
420 424Right-handed 310
Helix 17
AB8
B
440 446Right-handed alpha
Helix 18
AB9
B
447 470Right-handed alpha
Helix 19
AC1
B
473 495Right-handed alpha
Helix 20
AC2
B
498 503Right-handed alpha
Helix 21
AC3
B
520 526Right-handed alpha
Helix 22
AC4
B
541 546Right-handed alpha
Helix 23
AC5
B
547 557Right-handed alpha
Helix 24
AC6
B
566 577Right-handed alpha
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There are 4 sheets in PDB entry 9SX3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 370first strand
Strand 2
A
376 382anti-parallel
Strand 3
A
427 432anti-parallel
Strand 4
A
401 405parallel
Strand 5
A
408 411anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 519first strand
Strand 2
A
507 510anti-parallel
Strand 3
A
561 564anti-parallel
Strand 4
A
533 538parallel
Strand 5
A
582 586parallel
Strand 6
A
578 579anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 370first strand
Strand 2
B
376 382anti-parallel
Strand 3
B
427 432anti-parallel
Strand 4
B
401 405parallel
Strand 5
B
408 411anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
518 519first strand
Strand 2
B
507 510anti-parallel
Strand 3
B
561 564anti-parallel
Strand 4
B
534 538parallel
Strand 5
B
582 586parallel
Strand 6
B
578 579anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il