Analysis of interatomic Contacts of Structural Units in PDB entry:
9SYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SYV entry

There are 6 chains in PDB entry 9SYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 16ARG 939
B
 GLU 16ARG 939
C
 GLU 16ARG 939
D
 THR 5THR 40
E
 THR 5THR 40
F
 THR 5THR 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 9SYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 27Right-handed alpha
Helix 2
AA2
A
27 45Right-handed alpha
Helix 3
AA3
A
48 56Right-handed alpha
Helix 4
AA4
A
65 78Right-handed alpha
Helix 5
AA5
A
97 115Right-handed alpha
Helix 6
AA6
A
128 133Right-handed alpha
Helix 7
AA7
A
134 136Right-handed 310
Helix 8
AA8
A
155 172Right-handed alpha
Helix 9
AA9
A
184 219Right-handed alpha
Helix 10
AB1
A
221 249Right-handed alpha
Helix 11
AB2
A
255 287Right-handed alpha
Helix 12
AB3
A
290 319Right-handed alpha
Helix 13
AB4
A
320 323Right-handed 310
Helix 14
AB5
A
325 330Right-handed alpha
Helix 15
AB6
A
331 360Right-handed alpha
Helix 16
AB7
A
374 384Right-handed alpha
Helix 17
AB8
A
384 401Right-handed alpha
Helix 18
AB9
A
420 433Right-handed alpha
Helix 19
AC1
A
453 469Right-handed alpha
Helix 20
AC2
A
696 704Right-handed alpha
Helix 21
AC3
A
723 741Right-handed alpha
Helix 22
AC4
A
744 749Right-handed 310
Helix 23
AC5
A
756 791Right-handed alpha
Helix 24
AC6
A
792 820Right-handed alpha
Helix 25
AC7
A
829 857Right-handed alpha
Helix 26
AC8
A
860 889Right-handed alpha
Helix 27
AC9
A
890 893Right-handed 310
Helix 28
AD1
A
895 915Right-handed alpha
Helix 29
AD2
A
915 929Right-handed alpha
Helix 30
AD3
A
930 934Right-handed 310
Helix 31
AD4
B
18 27Right-handed alpha
Helix 32
AD5
B
27 45Right-handed alpha
Helix 33
AD6
B
48 56Right-handed alpha
Helix 34
AD7
B
65 78Right-handed alpha
Helix 35
AD8
B
97 115Right-handed alpha
Helix 36
AD9
B
128 133Right-handed alpha
Helix 37
AE1
B
134 136Right-handed 310
Helix 38
AE2
B
155 172Right-handed alpha
Helix 39
AE3
B
184 219Right-handed alpha
Helix 40
AE4
B
221 249Right-handed alpha
Helix 41
AE5
B
255 287Right-handed alpha
Helix 42
AE6
B
290 319Right-handed alpha
Helix 43
AE7
B
320 323Right-handed 310
Helix 44
AE8
B
325 330Right-handed alpha
Helix 45
AE9
B
331 360Right-handed alpha
Helix 46
AF1
B
374 384Right-handed alpha
Helix 47
AF2
B
384 401Right-handed alpha
Helix 48
AF3
B
420 433Right-handed alpha
Helix 49
AF4
B
453 469Right-handed alpha
Helix 50
AF5
B
696 704Right-handed alpha
Helix 51
AF6
B
723 741Right-handed alpha
Helix 52
AF7
B
744 749Right-handed 310
Helix 53
AF8
B
756 791Right-handed alpha
Helix 54
AF9
B
792 820Right-handed alpha
Helix 55
AG1
B
829 857Right-handed alpha
Helix 56
AG2
B
860 889Right-handed alpha
Helix 57
AG3
B
890 893Right-handed 310
Helix 58
AG4
B
895 915Right-handed alpha
Helix 59
AG5
B
915 929Right-handed alpha
Helix 60
AG6
B
930 934Right-handed 310
Helix 61
AG7
C
18 27Right-handed alpha
Helix 62
AG8
C
27 45Right-handed alpha
Helix 63
AG9
C
48 56Right-handed alpha
Helix 64
AH1
C
65 78Right-handed alpha
Helix 65
AH2
C
97 115Right-handed alpha
Helix 66
AH3
C
128 133Right-handed alpha
Helix 67
AH4
C
134 136Right-handed 310
Helix 68
AH5
C
155 172Right-handed alpha
Helix 69
AH6
C
184 219Right-handed alpha
Helix 70
AH7
C
221 249Right-handed alpha
Helix 71
AH8
C
255 287Right-handed alpha
Helix 72
AH9
C
290 319Right-handed alpha
Helix 73
AI1
C
320 323Right-handed 310
Helix 74
AI2
C
325 330Right-handed alpha
Helix 75
AI3
C
331 360Right-handed alpha
Helix 76
AI4
C
374 384Right-handed alpha
Helix 77
AI5
C
384 401Right-handed alpha
Helix 78
AI6
C
420 433Right-handed alpha
Helix 79
AI7
C
453 469Right-handed alpha
Helix 80
AI8
C
696 704Right-handed alpha
Helix 81
AI9
C
723 741Right-handed alpha
Helix 82
AJ1
C
744 749Right-handed 310
Helix 83
AJ2
C
756 791Right-handed alpha
Helix 84
AJ3
C
792 820Right-handed alpha
Helix 85
AJ4
C
829 857Right-handed alpha
Helix 86
AJ5
C
860 889Right-handed alpha
Helix 87
AJ6
C
890 893Right-handed 310
Helix 88
AJ7
C
895 915Right-handed alpha
Helix 89
AJ8
C
915 929Right-handed alpha
Helix 90
AJ9
C
930 934Right-handed 310
Helix 91
AK1
D
6 28Right-handed alpha
Helix 92
AK2
E
6 28Right-handed alpha
Helix 93
AK3
F
6 28Right-handed alpha
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There are 9 sheets in PDB entry 9SYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
142 149anti-parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
178 183anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 409first strand
Strand 2
A
826 827parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 477first strand
Strand 2
A
710 717anti-parallel
Strand 3
A
441 446anti-parallel
Strand 4
A
750 755anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
142 149anti-parallel
Strand 3
B
86 93anti-parallel
Strand 4
B
178 183anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 409first strand
Strand 2
B
826 827parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 477first strand
Strand 2
B
710 717anti-parallel
Strand 3
B
441 446anti-parallel
Strand 4
B
750 755anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 123first strand
Strand 2
C
142 149anti-parallel
Strand 3
C
86 93anti-parallel
Strand 4
C
178 183anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
408 409first strand
Strand 2
C
826 827parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
473 477first strand
Strand 2
C
710 717anti-parallel
Strand 3
C
441 446anti-parallel
Strand 4
C
750 755anti-parallel
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