Analysis of interatomic Contacts of Structural Units in PDB entry:
9SZU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SZU entry

There is 1 chain in PDB entry 9SZU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ALA 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9SZU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
34 44Right-handed alpha
Helix 3
AA3
A
62 80Right-handed alpha
Helix 4
AA4
A
100 119Right-handed alpha
Helix 5
AA5
A
128 140Right-handed alpha
Helix 6
AA6
A
150 161Right-handed alpha
Helix 7
AA7
A
171 185Right-handed alpha
Helix 8
AA8
A
196 206Right-handed alpha
Helix 9
AA9
A
224 243Right-handed alpha
Helix 10
AB1
A
262 281Right-handed alpha
Helix 11
AB2
A
290 301Right-handed alpha
Helix 12
AB3
A
312 322Right-handed alpha
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There are 2 sheets in PDB entry 9SZU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
28 32parallel
Strand 3
A
48 51parallel
Strand 4
A
144 148parallel
Strand 5
A
164 168parallel
Strand 6
A
190 194parallel
Strand 7
A
210 214parallel
Strand 8
A
306 310parallel
Strand 9
A
2 5parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
54 59anti-parallel
Strand 3
A
92 97anti-parallel
Strand 4
A
85 89anti-parallel
Strand 5
A
246 251anti-parallel
Strand 6
A
254 259anti-parallel
Strand 7
A
217 221anti-parallel
Strand 8
A
285 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il