Analysis of interatomic Contacts of Structural Units in PDB entry:
9SZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SZW entry

There are 3 chains in PDB entry 9SZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ARG 141
B
 HIS 2HIS 146
C
 ALA 86ILE 655
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9SZW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 18Right-handed alpha
Helix 2
AA2
A
20 36Right-handed alpha
Helix 3
AA3
A
37 43Right-handed 310
Helix 4
AA4
A
52 72Right-handed alpha
Helix 5
AA5
A
75 80Right-handed alpha
Helix 6
AA6
A
80 89Right-handed alpha
Helix 7
AA7
A
94 113Right-handed alpha
Helix 8
AA8
A
118 138Right-handed alpha
Helix 9
AA9
B
4 16Right-handed alpha
Helix 10
AB1
B
22 35Right-handed alpha
Helix 11
AB2
B
36 42Right-handed 310
Helix 12
AB3
B
50 56Right-handed alpha
Helix 13
AB4
B
57 75Right-handed alpha
Helix 14
AB5
B
80 85Right-handed alpha
Helix 15
AB6
B
85 95Right-handed alpha
Helix 16
AB7
B
99 119Right-handed alpha
Helix 17
AB8
B
120 122Right-handed 310
Helix 18
AB9
B
123 142Right-handed alpha
Helix 19
AC1
C
89 94Right-handed alpha
Helix 20
AC2
C
95 100Right-handed 310
Helix 21
AC3
C
124 129Right-handed alpha
Helix 22
AC4
C
329 334Right-handed alpha
Helix 23
AC5
C
364 370Right-handed alpha
Helix 24
AC6
C
392 394Right-handed 310
Helix 25
AC7
C
465 469Right-handed 310
Helix 26
AC8
C
471 487Right-handed alpha
Helix 27
AC9
C
489 501Right-handed alpha
Helix 28
AD1
C
508 534Right-handed alpha
Helix 29
AD2
C
563 569Right-handed 310
Helix 30
AD3
C
590 592Right-handed 310
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There are 6 sheets in PDB entry 9SZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 112first strand
Strand 2
C
135 138anti-parallel
Strand 3
C
144 150anti-parallel
Strand 4
C
182 189anti-parallel
Strand 5
C
171 176anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 117first strand
Strand 2
C
210 219anti-parallel
Strand 3
C
195 202anti-parallel
Strand 4
C
156 163anti-parallel
Strand 5
C
166 167anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
349 352first strand
Strand 2
C
371 380anti-parallel
Strand 3
C
383 390anti-parallel
Strand 4
C
422 427anti-parallel
Strand 5
C
411 415anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 357first strand
Strand 2
C
447 462anti-parallel
Strand 3
C
432 443anti-parallel
Strand 4
C
396 403anti-parallel
Strand 5
C
406 407anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
545 550first strand
Strand 2
C
573 578anti-parallel
Strand 3
C
581 587anti-parallel
Strand 4
C
615 621anti-parallel
Strand 5
C
605 610anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
552 556first strand
Strand 2
C
643 652anti-parallel
Strand 3
C
628 636anti-parallel
Strand 4
C
594 599anti-parallel
Strand 5
C
602 603anti-parallel
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